Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0443
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    24   1.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.3  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +2

Query: 194 FSRDERGSVRANTASRSRCRPSADSRWHNVVLGSVDSGRAGPTY 325
           F R ERGS+        + RPS D  +   V     +G  G  Y
Sbjct: 34  FRRQERGSIVIQGTKEGKSRPSLDIDYKQRVYDK--NGMTGDAY 75


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 117 FTAPGTPAPQPVELEAPTPMPHEYEPSVETSEGAFAQTP 233
           +  PG  AP+ ++   PTP    Y   +   +  F + P
Sbjct: 215 YGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLP 253


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 188 IFVRHWSGCL*F 153
           + + HWSGCL F
Sbjct: 287 LLIGHWSGCLQF 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 188 IFVRHWSGCL*F 153
           + + HWSGCL F
Sbjct: 255 LLIGHWSGCLQF 266


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 426 TPPASFRHVADHLASAT 376
           T P S  HV+DH A+ T
Sbjct: 257 TKPTSPYHVSDHKAAIT 273


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 308 SRSQRTQGRHYATWSLRRVYIEIWTRCLRERS 213
           SRS+  + + Y   +  R Y E W    R+R+
Sbjct: 40  SRSREREQKSYKNENSYRKYRETWKERSRDRT 71


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 308 SRSQRTQGRHYATWSLRRVYIEIWTRCLRERS 213
           SRS+  + + Y   +  R Y E W    R+R+
Sbjct: 40  SRSREREQKSYKNENSYRKYRETWKERSRDRT 71


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 308 SRSQRTQGRHYATWSLRRVYIEIWTRCLRERS 213
           SRS+  + + Y   +  R Y E W    R+R+
Sbjct: 40  SRSREREQKSYKNENSYRKYRETWKERSRDRT 71


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 308 SRSQRTQGRHYATWSLRRVYIEIWTRCLRERS 213
           SRS+  + + Y   +  R Y E W    R+R+
Sbjct: 40  SRSREREQKSYKNENSYRKYRETWKERSRDRT 71


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 474 GMTPAGLHHGGMTPGLGLDSGMT 542
           G    G ++GG   GLG+ SG++
Sbjct: 37  GSIVVGANNGGGGGGLGIASGLS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,357
Number of Sequences: 438
Number of extensions: 5613
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)