Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0442
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    33   0.008
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   0.24 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   2.2  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   2.2  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   2.2  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   2.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   2.9  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    25   2.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   3.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   5.1  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   5.1  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    24   6.7  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    24   6.7  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    24   6.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    23   8.8  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    23   8.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    23   8.8  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 214 HDRVFTGSAGTGKSFLLKRIV 276
           H   FTGSAGTGKS LL++I+
Sbjct: 326 HSIFFTGSAGTGKSVLLRKII 346


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 321 PVYAVGIVTSVGKVCHNPF**ETFSCSCRASENPVVY 211
           P+Y V  V +V  V  NPF   TFS + +AS +P ++
Sbjct: 365 PIYNVPNVPTVPTVSPNPFLQPTFSGTSQASAHPSIH 401


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 HWLCRNRKKFLIKKDCGRLYLLM*RCP 308
           H  C N  KF+I  + GRL+ +  R P
Sbjct: 178 HLCCSNPMKFIISTNFGRLFSVQLRDP 204


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 202 RKPVHDRVFTGSAGTGKSFLLKRIVAD 282
           RKP    +  G  GTGKS+L K +  +
Sbjct: 159 RKPWSGILLYGPPGTGKSYLAKAVATE 185


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 133 YGRARSKSSNSP--ADETHSTQSAHRKPVHDRVFTGSAGTGKSFL 261
           Y +  ++  N P  +D  HS++S HR PV   +    A  G   L
Sbjct: 14  YYKQNARMQNRPRFSDRKHSSKSKHRFPVDPSLQPDEADEGTRLL 58


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 205 KPVHDRVFTGSAGTGKSFLLKRIVAD 282
           KPV   V  G +G GKS LLKR++ D
Sbjct: 19  KPV---VVFGPSGVGKSTLLKRLLKD 41


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 190 QSAHRKPVHDRVFTGSAGTGKSFLLKRIV 276
           + ++ KPV   V TG   +GKS +L RI+
Sbjct: 170 EQSNPKPVVHLVVTGHVDSGKSTMLGRIM 198


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 223 VFTGSAGTGKSFLLKRIV 276
           V  G +GTGKS LL+R V
Sbjct: 13  VLAGPSGTGKSCLLQRFV 30


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 205 KPVHDRVFTGSAGTGKSFLLKRIVA 279
           +P+   +F G +GTGK+ L K + +
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 124 SATYGRARSKSSN---SPADETHSTQSAHRKPVHDRVFT 231
           +A++ + +S  S+   SP++ET    S   K VH+  FT
Sbjct: 94  NASFSKTKSFPSSVTYSPSEETFPLTSGMNKSVHEYPFT 132


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 202 RKPVHDRVFTGSAGTGKSFLLKRIVAD 282
           R+PV   +  G  GTGK+ L + +  +
Sbjct: 409 REPVQGMLLFGPPGTGKTMLARAVATE 435


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 130 TYGRARSKSSNSPADETHSTQS 195
           TYG+ RS + NSP   T S  S
Sbjct: 185 TYGKLRSVTINSPTSATLSFSS 206


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 194 LCVLWVSSAGELLDF 150
           LCV+ V++AG+ LDF
Sbjct: 290 LCVIGVAAAGKTLDF 304


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 160  NSPADETHSTQSAHRKPVHDRVFTGSAGTGKSFL 261
            N+ ADE  + Q+  ++   D    G +GT K  L
Sbjct: 1891 NTTADEQQTVQNIDKEESEDAAGRGLSGTSKKAL 1924


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  PAVTQRERRSDASVTIAQRPVIRHLRTRP 146
           P  T   RR +   T+ +RP IRH R+ P
Sbjct: 547 PTETSSLRRKN---TLTRRPSIRHARSSP 572


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 229 TGSAGTGKSFLLKRIVAD 282
           TGS G+GK+ LL  +V D
Sbjct: 296 TGSNGSGKTTLLAYVVGD 313


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 133 YGRARSKSSNSPADETHSTQSAHRKPVH 216
           YGR  SK S++P      T    + PVH
Sbjct: 110 YGRKLSKFSSAPPGYNPETGQDAKAPVH 137


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 55  IERRGPKPAPGATRSPPP 2
           I  R P P PG T SP P
Sbjct: 588 IPPRVPTPVPGRTLSPKP 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,304
Number of Sequences: 5004
Number of extensions: 25501
Number of successful extensions: 74
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)