Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0442
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.014
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              33   0.072
SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)            29   1.2  
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              28   2.1  
SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)                 28   2.1  
SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1)                 27   2.7  
SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)                27   4.8  
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   27   4.8  
SB_50175| Best HMM Match : fn3 (HMM E-Value=1.3e-12)                   26   6.3  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  26   8.3  

>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +1

Query: 226 FTGSAGTGKSFLLKRIV 276
           FTGSAGTGKSFLL+R++
Sbjct: 208 FTGSAGTGKSFLLRRLI 224


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 18   VAPGAGFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQ 185
            VAP     P  ++ P  T R  ++D SVT A +  +  L+T+   +       +P+
Sbjct: 1708 VAPDTTVAPETTVVPETTMRPPKTDVSVTEATKAPVDQLKTKQPTISTAKTTAEPE 1763



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 18   VAPGAGFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQ 185
            VAP     P  ++ P  T    ++D SVT A +  +  L+T+   +       DP+
Sbjct: 1952 VAPDTTVAPETTVVPETTMPPPKTDVSVTEATKAPVDQLKTKQPTIATAKTTADPE 2007


>SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)
          Length = 607

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 133 YGRARSKSSNSPADETHSTQSAHRKPVHDRVFTGSAGTGKSF 258
           Y RAR+  ++ P+D    T   +  P ++  F G  G G  F
Sbjct: 11  YHRARAHDTDQPSDPCQRTADQNPYPTYNSAFLGYPGFGYLF 52


>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 214 HDRVFTGSAGTGKSFLL 264
           H+   TG AGTGKSFL+
Sbjct: 617 HNTFLTGKAGTGKSFLI 633


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 191 CVLWVSSAGELLDFDRARP*VADHGPLGNSHRGIAPSLPLCYG-GRD*ATRTKTST 27
           CV W+  +GEL D  RA     + G +        PS+  CYG G+  A +  TS+
Sbjct: 524 CVCWMWCSGELYDI-RAIVSPEEIGQVSKDQYIPEPSIKACYGRGKMQAKKNTTSS 578


>SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)
          Length = 252

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 53  NLSRRNTTGEKERCLCDYCPEARDPPPTDAPG 148
           N  ++NT G+     CD C  AR+P   D  G
Sbjct: 88  NRDQKNTDGDPLGDACDNCINARNPTQADRDG 119


>SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 187 TQSAHRKPVHDRVFTGSAGTGKSFLLKRI 273
           T S H    +  V  G AG GKSF++ R+
Sbjct: 5   TSSGHTYKQYKVVLVGDAGVGKSFVIDRL 33


>SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1)
          Length = 514

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 214 HDRVFTGSAGTGKSFLLKRI 273
           H+   TG AGTGKS L+K I
Sbjct: 17  HNVFITGQAGTGKSHLVKAI 36


>SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)
          Length = 155

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 8  RRACSPRCWFWSASLN 55
          +R+C+P CW WS+S N
Sbjct: 29 KRSCTPCCW-WSSSCN 43


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +1

Query: 145 RSKSSNSPADETHSTQSAHRKPVHDRVFTGSAGTGKS-----FLLKRIVADF 285
           + K +N+   +  S  S+H+  +   V  G  G GKS     FL KR + ++
Sbjct: 839 KRKDNNNTLKKNRSKASSHQGRIVKVVIIGEDGVGKSALTVRFLTKRFIGEY 890


>SB_50175| Best HMM Match : fn3 (HMM E-Value=1.3e-12)
          Length = 160

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 51  SISPAVTQRERRSDASVTIAQRPV 122
           ++SP VT+ + RS  S+ +  RPV
Sbjct: 64  AVSPDVTRADNRSSTSILVQWRPV 87


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 51   SISPAVTQRERRSDASVTIAQRPV 122
            ++SP VT+ + RS  S+ +  RPV
Sbjct: 2046 AVSPDVTRADNRSSTSILVQWRPV 2069


>SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 39  GPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHA 191
           G R +  P  T     +  S T ++RP   H R R  + +  P  + P+H+
Sbjct: 109 GARAATWPGATASSSSTSTS-TESKRPTSPHHRERDRDPENAPPSKSPRHS 158


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 60  PAVTQRERRSDASVTIAQRPVIRHLRTRPV 149
           P +  RE + +ASVTI  +P   H   RP+
Sbjct: 272 PVLEFREPKENASVTIQLKPKEHHFIIRPM 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,703
Number of Sequences: 59808
Number of extensions: 241617
Number of successful extensions: 808
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)