Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0442
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 32 0.085
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 32 0.085
AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna hel... 32 0.085
AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein. 32 0.085
U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical pr... 32 0.11
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.20
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 30 0.34
Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical pr... 28 1.8
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 27 3.2
U40421-5|AAA81441.1| 133|Caenorhabditis elegans Hypothetical pr... 26 5.6
U39855-6|AAA81085.1| 132|Caenorhabditis elegans Hypothetical pr... 26 5.6
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 26 5.6
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 26 5.6
Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical pr... 26 7.4
U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein. 26 7.4
AL132872-1|CAB60760.1| 180|Caenorhabditis elegans Hypothetical ... 26 7.4
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 26 7.4
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 26 7.4
AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical ... 26 7.4
AC006685-5|AAK84575.1| 254|Caenorhabditis elegans Hypothetical ... 26 7.4
Z81532-4|CAE17815.1| 136|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 25 9.7
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 25 9.7
U29380-5|AAA68737.1| 151|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 25 9.7
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 25 9.7
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 32.3 bits (70), Expect = 0.085
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 65 RNTTGEKERCLCDYCPEARDPPPTDAPG 148
RN G C C+ CP+ PPP PG
Sbjct: 167 RNCIGGPPHCECENCPKPPPPPPIPPPG 194
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 32.3 bits (70), Expect = 0.085
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 65 RNTTGEKERCLCDYCPEARDPPPTDAPG 148
RN G C C+ CP+ PPP PG
Sbjct: 167 RNCIGGPPHCECENCPKPPPPPPIPPPG 194
>AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna
helicase (yeast) homologprotein 1 protein.
Length = 677
Score = 32.3 bits (70), Expect = 0.085
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 226 FTGSAGTGKSFLLKRIV 276
FTGSAGTGKS +L+RI+
Sbjct: 266 FTGSAGTGKSVILRRII 282
>AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein.
Length = 677
Score = 32.3 bits (70), Expect = 0.085
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 226 FTGSAGTGKSFLLKRIV 276
FTGSAGTGKS +L+RI+
Sbjct: 266 FTGSAGTGKSVILRRII 282
>U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical
protein ZK546.7 protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 65 RNTTGEKERCLCDYCPEARDPPPTDAPG 148
RN G C C+ CP+ PPP PG
Sbjct: 132 RNCVGGPPYCECENCPKLPPPPPIPPPG 159
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
protein K10D2.3 protein.
Length = 1425
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +1
Query: 112 RGP*SATYGRARSKSSNSPADETHSTQSAHRKPVHDR 222
RG S GR RS SNSPAD S+Q R P +R
Sbjct: 20 RGGNSQNSGRKRS--SNSPADSASSSQKTSRNPSQNR 54
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 166 GSCWTSTGRVRRWRITGLWAIVTEASLLLSRCVTAGEIERRGPKPAPGATRS 11
GSC T + RW +TG + +LL G+ E+ P PGA+RS
Sbjct: 717 GSCITLSELGERWLLTGKEMKIDATPILLQ-----GKKEKAAPSTVPGASRS 763
>Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical
protein T23G7.5a protein.
Length = 261
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 133 YGRARSKSSNSPADETHSTQSAHR 204
YG++ KSS + AD T S++ HR
Sbjct: 234 YGKSSGKSSGNSADSTISSEQLHR 257
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 139 VRRWRITGLWAIVTEASLLLSRCVTAGEIERRGPKPAPGATRSPPP 2
+R +++T L+ + SL R RR P P G PPP
Sbjct: 1 MRTFQLTLLFTALAVTSLAAPRFSVGETASRRPPPPPKGTGTPPPP 46
>U40421-5|AAA81441.1| 133|Caenorhabditis elegans Hypothetical
protein C02B8.3 protein.
Length = 133
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 26 RCWFWSASLNLSRRNTTGEKERCLCDYCPEARD 124
RCW S +LS+ +T + LC Y P +D
Sbjct: 16 RCWEPIDSDDLSKGHTMSDPVYQLCSYMPSPKD 48
>U39855-6|AAA81085.1| 132|Caenorhabditis elegans Hypothetical
protein F18G5.6 protein.
Length = 132
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 63 AVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHAE 194
A T E+R + + +AQR + LR++ V VQQ+ R P + E
Sbjct: 68 AETAMEKRIE-ELRMAQRILDEQLRSKQVAVQQVLTERKPCNVE 110
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 98 CDYCPEARDPP 130
CD+CPE R PP
Sbjct: 295 CDHCPEPRTPP 305
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 98 CDYCPEARDPP 130
CD+CPE R PP
Sbjct: 295 CDHCPEPRTPP 305
>Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical
protein ZC168.4 protein.
Length = 361
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 33 GFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHAECAPXAR 212
G GP + ++ Q +R +A +A +P PVE Q +R + Q AE A
Sbjct: 25 GNGPLKPVNAQGLQTKR--EAREILALKPS----NPAPVETAQKSQRINLQDAETKCLAM 78
Query: 213 TRPGFHWLCRNRKKFLIKK 269
+ +L + KK+L+++
Sbjct: 79 ADDIYKYLVHHEKKYLLEE 97
>U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein.
Length = 361
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 33 GFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHAECAPXAR 212
G GP + ++ Q +R +A +A +P PVE Q +R + Q AE A
Sbjct: 25 GNGPLKPVNAQGLQTKR--EAREILALKPS----NPAPVETAQKSQRINLQDAETKCLAM 78
Query: 213 TRPGFHWLCRNRKKFLIKK 269
+ +L + KK+L+++
Sbjct: 79 ADDIYKYLVHHEKKYLLEE 97
>AL132872-1|CAB60760.1| 180|Caenorhabditis elegans Hypothetical
protein Y116F11A.1 protein.
Length = 180
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 223 VFTGSAGTGKSFLLKRI 273
+ G+AGTGK+FL+K I
Sbjct: 26 MINGAAGTGKTFLIKLI 42
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 163 SCWTSTGRVRRWRIT 119
+CW+ GRV+ W IT
Sbjct: 183 ACWSDQGRVQVWNIT 197
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 193 SAHRKPVHDRVFTGSAGTGKSFLLKRIVAD 282
+ +RKP + G GTGKS++ K + +
Sbjct: 145 TGNRKPWQGILLFGPPGTGKSYIAKAVATE 174
>AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical
protein Y46H3D.4 protein.
Length = 517
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 17 CSPRCWFWSASLNLS 61
C P+CWF A +N S
Sbjct: 30 CDPKCWFREAEVNSS 44
>AC006685-5|AAK84575.1| 254|Caenorhabditis elegans Hypothetical
protein T13G4.6 protein.
Length = 254
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 166 PADETHSTQSAHRKPVHDRVFTGSAGTGKSFLLKRIVADFTY*CND 303
P + + Q+ H KP H R+ + +FLL ++ D + C D
Sbjct: 45 PRTDQQNGQALH-KPRHRRILSEEDMLRSTFLLTKVFQDGLFQCKD 89
>Z81532-4|CAE17815.1| 136|Caenorhabditis elegans Hypothetical
protein F36F2.7 protein.
Length = 136
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 33 GFGPRRSISPAVTQRERRS-DASVTIAQRPVIRHLRTRPVEVQQLPRR 173
G P+RS + S + T +P +R + T PVEV+ R+
Sbjct: 54 GISPKRSTIRVIKSLPNTSLPPTPTAYTKPPVRRVHTNPVEVESPSRQ 101
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 GRRACSPRCWFWSASLNLSRR--NTTGEKERCLCDYCPEARDPPPT 136
G C P C + R N T K++ + P+ DPPPT
Sbjct: 93 GFENCLPFCLMFLVDYVCDHRITNITSGKKKQVSFSVPDGNDPPPT 138
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 130 TYGRARSKSSNSPADETHST-QSAHRKPVH 216
++G +RSKS S A E H T + H H
Sbjct: 221 SFGMSRSKSMGSVAHEAHQTSNNQHSSETH 250
>U29380-5|AAA68737.1| 151|Caenorhabditis elegans Hypothetical
protein ZK546.4 protein.
Length = 151
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 48 RSISPAVTQRERRSDASVTIA 110
R+I+PAV +R R +A VT+A
Sbjct: 3 RAITPAVPRRSFRKEAIVTVA 23
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 GRRACSPRCWFWSASLNLSRR--NTTGEKERCLCDYCPEARDPPPT 136
G C P C + R N T K++ + P+ DPPPT
Sbjct: 93 GFENCLPFCLMFLVDYVCDHRITNITSGKKKQVSFSVPDGNDPPPT 138
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 32 WFWSASLNLS 61
WFWSASL+LS
Sbjct: 665 WFWSASLSLS 674
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,166,390
Number of Sequences: 27780
Number of extensions: 166207
Number of successful extensions: 662
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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