Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0439
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    27   9.2  
At5g24250.1 68418.m02853 hypothetical protein                          27   9.2  

>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 489  TFS*EGCGNSSQNCQTQASSFQIEDC---TEAQKDWD*GTKKSSETCY 623
            TF+   CGN  Q  + + +S+    C   ++A+K ++ G++    TC+
Sbjct: 891  TFNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEALFSTCF 938


>At5g24250.1 68418.m02853 hypothetical protein 
          Length = 226

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 705 KCTELRIFRYSLPMFTFYNLPLSLKCFSNRFHYFFL 598
           K +E+++++Y    F      LS  CFS    +FFL
Sbjct: 58  KVSEVKLYKYIPTKFAAVQRRLSYHCFSLSLFFFFL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,528,735
Number of Sequences: 28952
Number of extensions: 89088
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)