Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0438
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        39   2e-04
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.24 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   3.9  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   3.9  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   5.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.1  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    24   9.0  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    24   9.0  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    24   9.0  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.0  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +1

Query: 52  FLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGES-VRLAPSLR 228
           FLL +F  V           + S + PY+     ++ +WEYGG+ +   ++ + L   ++
Sbjct: 9   FLLGIFGFVLGALAETSHLERLSLEAPYINHGMRNL-WWEYGGSTVIDRKNGIFLTQDVQ 67

Query: 229 SQKGAIWTKQPINFDWWEVDIMFKITGRG-RIGADGLVFWYTTQR 360
           +Q+G I T+ P     +EV   F+I      +  DGL F+   +R
Sbjct: 68  NQQGWISTRLPTPSSSFEVLFQFRINSESTSLFGDGLAFFLAAER 112


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 232 QKGAIWTKQPINFDWWEVDIMFKI 303
           +KG+IW ++PI+ +W + D  F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 307  GRGRIGADGLVFWYTTQRGD 366
            GRG++G  G +F+   QRG+
Sbjct: 1289 GRGKLGDGGEIFYACDQRGE 1308


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 116 YLYSKRLCTDCVFTLTNRHNKN 51
           +++SK+ C + V TLTNR   N
Sbjct: 556 FVFSKKRCEEYVDTLTNRDLNN 577


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 131 GGLNEYLYSKRLCTDCVFTLTNRHNKNAHTINLKFKNSIATLP 3
           G L +Y Y  ++C   V      HNK +H I +    S+A LP
Sbjct: 42  GPLAQYAYFNQVCVGAVRCKKETHNK-SHKIQIL---SLAVLP 80


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 218 GARRTLSPDAIAFPPYSQNGTDPSFC 141
           G +  L+ D    PP  +NG +  FC
Sbjct: 446 GIQLVLTGDFFQLPPVPENGKESKFC 471


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 298 KITGRGRIGADGLVFWYTTQR 360
           K  GRG + AD +  WYTT +
Sbjct: 112 KDCGRGEVLADLIEEWYTTTK 132


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 229 FEATARDGRSPLMLLRFHHTPKTAPIH 149
           FEA+A + +     L   H P  APIH
Sbjct: 15  FEASAEEIKKSYKRLALLHHPDKAPIH 41


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 199 ESVRLAPSLRSQKGAIWTKQPINFDWWEV-DIMFKI 303
           +SV +A S+R    A+W++  +NFD   V DI+ K+
Sbjct: 451 QSVLMA-SVRESLPAVWSRISLNFDGIPVNDIVAKL 485


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 275 QSKLMGCLVHIAPFWLRSDGARRTLSP 195
           QS ++G LV + PF +  DG      P
Sbjct: 322 QSIILGGLVRVTPFEINEDGNHEVGKP 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,613
Number of Sequences: 5004
Number of extensions: 36839
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)