Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0438
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 30 0.68
03_04_0118 + 17418558-17419310 29 1.2
05_04_0320 + 20181560-20182063,20182513-20182853,20183159-201838... 28 2.7
06_03_0061 + 16111250-16111588,16111607-16111738,16112006-161121... 27 3.6
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 27 3.6
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 27 4.8
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492... 27 6.3
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 6.3
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 26 8.4
05_04_0382 + 20796567-20796810,20796894-20797750 26 8.4
01_06_1140 - 34836967-34836996,34837107-34838771 26 8.4
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 29.9 bits (64), Expect = 0.68
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 4 GKVAMEFLNFKLIVCAFLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGSVPFWEY 174
G V F + V AF + LF + +SV F+ ++F+ K+G FW +
Sbjct: 21 GGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFDPYFNFRVTQFLSKNGIYEFWNW 77
>03_04_0118 + 17418558-17419310
Length = 250
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 365 SPRCVVYQNTKPSAPILPLPVI-LNMISTSHQSKLMGCLVHIAPFWLRSDGARRTLSPDA 189
+P C++ +P I P I +++++ +K M C+++ + F A R L+ +
Sbjct: 133 APDCILMMEVEPKLEITMGPSITVSVLAHRKDTKKMACVINKSTFDYIDSNAARALAYEY 192
Query: 188 IAFPP 174
+ F P
Sbjct: 193 LQFSP 197
>05_04_0320 +
20181560-20182063,20182513-20182853,20183159-20183819,
20183954-20184112
Length = 554
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 303 NLEHDIDLPPVKVNGLFGPYSPLLASKRRRE 211
NL DI+ V + +F PY+PL+ S RRR+
Sbjct: 213 NLFRDIE-GGVNLMSVFFPYTPLIPSNRRRD 242
>06_03_0061 +
16111250-16111588,16111607-16111738,16112006-16112170,
16112278-16112319,16112418-16113179
Length = 479
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 372 GVVASLCGIPEYQAVSTYSASAGNLEHDIDLPPVKVNG---LFGPY 244
G+ + P Y A S + AG DI L PVK G L+GP+
Sbjct: 410 GITGTYTQRPVYLACSDAAPCAGLRLEDIKLAPVKEGGYGRLYGPF 455
>02_01_0399 -
2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 110 YSKRLCTDCVFTLTNRH 60
YS+RL DC +T N+H
Sbjct: 756 YSRRLVEDCYYTFVNKH 772
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 55 LLCLFVSVNT--QSVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGES 204
L L VS N+ + + F Y F Y+ +KD V W G A A GES
Sbjct: 420 LPALLVSYNSLQKPLKHCFSYCSLFPKEYVFRKDKLVRLWLAQGFAAADGES 471
>09_06_0234 -
21747724-21747839,21748027-21748096,21749157-21749294,
21749389-21749493,21750157-21750527,21750612-21750694,
21750803-21751063,21751425-21751606,21752539-21752649,
21752727-21752798,21752883-21753036,21753329-21753341,
21754015-21754084,21754409-21754485,21754582-21754640,
21755327-21755580
Length = 711
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 224 SDGARRTLSPDAIAFPPYS 168
+DG +SPD AFPPY+
Sbjct: 153 ADGVLSAISPDNNAFPPYT 171
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 92 CTDVLNTNIHSNHLI*RKKMDRCRFGSMVETQ*HQGRASVSRRRFEAR 235
C+D + I S ++I RK+ + +F + E + R RR E R
Sbjct: 289 CSDPPSAPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQSRRLEER 336
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 26.2 bits (55), Expect = 8.4
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +2
Query: 155 RCRFGSMVETQ*HQGRASVSRRRFEARRGLYGPNSPLTLTGGRSISCSRLPAEAE*VLTA 334
RC S+ +G AS +R + RR P+S T +GG + SR
Sbjct: 61 RCTSPSLSRASAAEGTASTNRAQSAERRRSSTPSSSSTPSGGGGGAASRPRTPVRVAAAT 120
Query: 335 WYSGIPHSEATT 370
GI A+T
Sbjct: 121 EVHGISRRAAST 132
>05_04_0382 + 20796567-20796810,20796894-20797750
Length = 366
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 94 HRRFEYKYSFKPP-YLAQKDGSVPFWEYGGNAIASGESVR 210
H + + F+P Y+A DGS P+ + A+++G S R
Sbjct: 173 HLLQHHLHHFQPDHYVATPDGSPPYAGHSHGAVSAGNSPR 212
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 218 GARRTLSPDAIAFPPYSQNGTDP 150
G R SPDA +FPP + P
Sbjct: 95 GLRHAYSPDAFSFPPLVSSAPSP 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,167
Number of Sequences: 37544
Number of extensions: 263343
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -