Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0438
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...   123   5e-29
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...   123   5e-29
U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    66   8e-12
AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical ...    29   1.4  
AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b prot...    29   1.4  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score =  123 bits (296), Expect = 5e-29
 Identities = 58/110 (52%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  VCAFLLCLFVSVNTQS--VHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGESVRLA 216
           V   LL + V++  Q+  V ++FEYK+SF+ P LAQ+DGS+PFW   G+AIASGE +RLA
Sbjct: 6   VLLVLLAVIVTIQAQNTPVFKKFEYKHSFRAPNLAQRDGSIPFWIVSGDAIASGEQLRLA 65

Query: 217 PSLRSQKGAIWTKQP-INFDWWEVDIMFKITGRGRIGADGLVFWYTTQRG 363
           PS+RS+KG  W K+  +  + ++VDI  KI G+GR+GADGL  WYT+Q G
Sbjct: 66  PSMRSRKGIAWNKRAFLESENFQVDIALKIGGQGRVGADGLGIWYTSQLG 115


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score =  123 bits (296), Expect = 5e-29
 Identities = 58/110 (52%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  VCAFLLCLFVSVNTQS--VHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGESVRLA 216
           V   LL + V++  Q+  V ++FEYK+SF+ P LAQ+DGS+PFW   G+AIASGE +RLA
Sbjct: 6   VLLVLLAVIVTIQAQNTPVFKKFEYKHSFRAPNLAQRDGSIPFWIVSGDAIASGEQLRLA 65

Query: 217 PSLRSQKGAIWTKQP-INFDWWEVDIMFKITGRGRIGADGLVFWYTTQRG 363
           PS+RS+KG  W K+  +  + ++VDI  KI G+GR+GADGL  WYT+Q G
Sbjct: 66  PSMRSRKGIAWNKRAFLESENFQVDIALKIGGQGRVGADGLGIWYTSQLG 115


>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 66.1 bits (154), Expect = 8e-12
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
 Frame = +1

Query: 73  SVNTQSVHR-RFEYK--YSFKPPYLAQKDGSVPFWEYGGNAIASGESVRLAPSLRSQKGA 243
           ++N Q+VH  R  YK  +S   PY       +P W   G+   S   +RL    +S+ GA
Sbjct: 32  NINGQTVHEFRGYYKREHSLIKPYTGS-GADIPNWNIIGSTFVSSNQIRLTADEQSKAGA 90

Query: 244 IWTKQPINFDWWEVDIMFKITG-RGRIGADGLVFWYTTQ 357
           +W  QP+    WE+ + FK+TG  G +  DG+  WYT++
Sbjct: 91  LWNTQPVWSRDWELQVSFKVTGSTGDLFGDGMAIWYTSE 129


>AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical
           protein Y43E12A.1 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 187 LRFHHTPKTAPIHLFALNKVV*MNI 113
           LRFH TP+T  + +F L++++  NI
Sbjct: 75  LRFHLTPETLHLTIFVLDRIIVKNI 99


>AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b protein
           2.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 187 LRFHHTPKTAPIHLFALNKVV*MNI 113
           LRFH TP+T  + +F L++++  NI
Sbjct: 97  LRFHLTPETLHLTIFVLDRIIVKNI 121


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -1

Query: 344 QNTKPSAPILPLPVILNMISTSHQSKLMGCLVHIAPFWLRSDGARRTLSPDAIAFPPYSQ 165
           +  K S P  P P+  N  S S ++           F  R D   R +   AIA P Y Q
Sbjct: 251 EEEKTSQPAAPAPIATNRHSRSSRASTEEKASTTIEF--RVDSNSRHVPVTAIATPYYLQ 308

Query: 164 NGT 156
           +GT
Sbjct: 309 SGT 311


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -1

Query: 344 QNTKPSAPILPLPVILNMISTSHQSKLMGCLVHIAPFWLRSDGARRTLSPDAIAFPPYSQ 165
           +  K S P  P P+  N  S S ++           F  R D   R +   AIA P Y Q
Sbjct: 251 EEEKTSQPAAPAPIATNRHSRSSRASTEEKASTTIEF--RVDSNSRHVPVTAIATPYYLQ 308

Query: 164 NGT 156
           +GT
Sbjct: 309 SGT 311


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 165 LGVWWKRNSIRGERPSRAVASKPEGGYMD 251
           LGVWW  +SIR  +       K   G MD
Sbjct: 669 LGVWWSTDSIREFKAREQCFVKQYAGLMD 697


>Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 165 LGVWWKRNSIRGERPSRAVASKPEGGYMD 251
           LGVWW  +SIR  +       K   G MD
Sbjct: 633 LGVWWSTDSIREFKAREQCFVKQYAGLMD 661


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 165 LGVWWKRNSIRGERPSRAVASKPEGGYMD 251
           LGVWW  +SIR  +       K   G MD
Sbjct: 669 LGVWWSTDSIREFKAREQCFVKQYAGLMD 697


>Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 165 LGVWWKRNSIRGERPSRAVASKPEGGYMD 251
           LGVWW  +SIR  +       K   G MD
Sbjct: 633 LGVWWSTDSIREFKAREQCFVKQYAGLMD 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,569,130
Number of Sequences: 27780
Number of extensions: 211957
Number of successful extensions: 609
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)