Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0438
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    27   0.096
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.51 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   0.89 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   3.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.3  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 0.096
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = -1

Query: 341 NTKPSAPILPLPVILNMISTSHQSKLMGCLVHIAPFWLRSDG-----ARRTLSPDAIAFP 177
           +T P++P L  P  LN++     +K+    +H +     SDG      R  L     +  
Sbjct: 23  STTPASPTLSTPPTLNLMEQILLAKIEKQNLHESDDLHESDGRVGGKRRNILLRRTDSMD 82

Query: 176 PYSQNGTDPSFCAK*GGLNEYLYSKRLCTDCVFTLTNRHNKNAHTINLK 30
             +   T  SF +     +  +Y K  C DC+  + + + +N   +  K
Sbjct: 83  SQNSASTYNSFLSSDSASSGNVYCK--CDDCLLGIVDDYQRNPSVVGRK 129


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 247 WTKQPINFDWWEVDI 291
           W K+PI  D +EVDI
Sbjct: 606 WVKKPIEQDMFEVDI 620


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 136 LAQKDGSVPFWEYGGNA 186
           L Q + SVP W  GGNA
Sbjct: 571 LKQANQSVPDWMMGGNA 587


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 73  SVNTQSVHRRFEYKYSFKPPY 135
           S++ +++H    YKY++   Y
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKY 104


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 52  FLLCLFVSVNTQSVH 96
           F  C F+SVN + VH
Sbjct: 118 FQECTFISVNGKEVH 132


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 119 EYLYSKRLCTDC 84
           EY+Y +  C DC
Sbjct: 567 EYVYDEYTCMDC 578


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 235 KGAIWTKQPINF 270
           KGA+WT   + F
Sbjct: 569 KGAVWTVDEVEF 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,699
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)