Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0437
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   3e-22
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                64   5e-11
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)                     32   0.23 
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        31   0.31 
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          28   3.8  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            28   3.8  
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_55119| Best HMM Match : zf-HYPF (HMM E-Value=10)                    27   8.7  

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  101 bits (242), Expect = 3e-22
 Identities = 47/65 (72%), Positives = 56/65 (86%), Gaps = 2/65 (3%)
 Frame = +2

Query: 239 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLTEGDLLCEIETDKATMGFETP 412
           R YSS   P+H KV LPALSPTME+G++VSWEK+EGD+L EGDLL +IETDKATM FETP
Sbjct: 59  RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118

Query: 413 EEGYL 427
           EEG++
Sbjct: 119 EEGFI 123


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +2

Query: 299 MESGSIVSWEKKEGDKLTEGDLLCEIETDKATMGFETPEEGYL 427
           ME+G+IVSW KKEGD +  GD LCEIETDKAT+  +T E+G L
Sbjct: 1   METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVL 43


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 263 HIKVNLPALSPTMESGSIVSWEKKEGDKLTEGDLLCEIETDKATMGFETPEEGYL 427
           ++ VN P  + ++  G I  W++  GD + E +++ EIETDK ++    P  G +
Sbjct: 47  YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVI 100


>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
          Length = 353

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 217 TTMDCSDEVLFESTITYKGQPSSSFANHG-EW 309
           TTMDC D  L  ST+ Y G P  S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 TMDCSDEVLFESTITYKGQPSSSFANHG 303
           TMDC D  L  +T+ Y G P  S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 89  ILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQT 205
           ++ D L K + S I+ C   E AKR + N+L E  ++ T
Sbjct: 816 VIVDDLSKQLESYISNCAELEEAKRAMDNRLTEKVESLT 854


>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 182 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 337
           LE  Q QT+L  P W+ Q  +Y  L S + V  P L P  +S   + +++++
Sbjct: 110 LESDQAQTILIVPNWSTQ-PWYPKL-SRLLVQKPILLPEKKSNIYLPFDQEK 159


>SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 131 TRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESG 310
           T C+ + L  +  T  L   +   +++S+PQ   +   ++    H KV+   LS   +  
Sbjct: 13  TDCVESPLPGKSPTETLFSSSPFLSLMSSPQLKTKQHQFTMNKLHQKVSKLQLSLDAQMH 72

Query: 311 SIVSWEKKEGDKLTEGDL 364
              + E++  DK  E D+
Sbjct: 73  MQATLEEELADKCKEIDV 90


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 NLPALSPTMESGSIVSWEKKEGDKLT 352
           N P+LSPT ES  + +W +K    LT
Sbjct: 558 NTPSLSPTSESAMLQNWRQKLERPLT 583


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 EKKEGDKLTEGDLLCEIETDKATMGFETPEE 418
           E+ EG++LTEGD    +  D  T G +T  +
Sbjct: 96  EENEGERLTEGDDYTFVMFDTETTGLDTSND 126


>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 EKKEGDKLTEGDLLCEIETDKATMGFETPEE 418
           E+ EG++LTEGD    +  D  T G +T  +
Sbjct: 4   EENEGERLTEGDDYTFVMFDTETTGLDTSND 34


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 SGSIVSWEKKEGDKLTEGDLLCEIETDK 388
           +G ++    K GD + EGD++ +IE  K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553


>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 185 EHAQNQTVLSTPQW---TVQMRYYSSLPSHIKVNLPALSPTMESGSIV 319
           EHA   T+ ST  W   TV M  +S++   +  ++ A++ T E G+ V
Sbjct: 417 EHAHAHTLFSTVLWTGSTVVMPTHSAVIQLVHTHVTAIAVTPEMGAAV 464


>SB_55119| Best HMM Match : zf-HYPF (HMM E-Value=10)
          Length = 164

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 47  KILIMLRTIVLRNQILSDGLKKAIRSNITRCISTELAKRKVTNKLL 184
           K+L       L++ I  + L++A++S   R  STE A  KV N +L
Sbjct: 34  KVLEKAVACQLKDHICDNNLEEALQSAYKRFHSTETALFKVQNDIL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,121
Number of Sequences: 59808
Number of extensions: 265436
Number of successful extensions: 671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)