Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0433
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 1.6
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 2.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 2.8
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 3.7
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 4.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 4.8
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 4.8
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 25 4.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 6.4
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 6.4
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 25 6.4
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 24 8.5
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 8.5
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 24 8.5
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 24 8.5
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 1.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 229 HFKCHICHKKLYTGPGLSI 285
+F C++C +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 214 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 303
H+ K F C C++ L+ H Q+H
Sbjct: 50 HENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 187 FDDEKILIQHQKAKHFKCHIC 249
+DD++ L +H + KH +C+IC
Sbjct: 255 YDDDE-LFKHCREKHERCYIC 274
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 229 HFKCHICHKKLYTGPGLSIHCMQVHK 306
H KC C+ Y L HC + H+
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHE 269
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 154 PNLGAGIVTGQF-DDEKILIQHQKAKHF--KCHICHKKLYTGPGLSIH-CMQVHKEAIDK 321
P L A + G+ +K + QK F C +C+KK Y+ S H + H++ + K
Sbjct: 41 PPLSAEVFAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSK 100
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 286 HCMQVHKEAIDKVPNSLPNRSN 351
H VHKE++ K+ +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 271 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEHE 411
PG+ + M +A+D +P +L S + I + + VKE++
Sbjct: 443 PGIDQYSMGAFADALDTIPLALAENSGLS-SIEALTAVKARHVKENK 488
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 418 FVSHVLSHLQGVYLPFHKFLF 356
F S VL ++QGV+LP LF
Sbjct: 299 FFSSVLPYVQGVFLPIKTKLF 319
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 309 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 184
FF + + YGQS++ + N T K + F + DE V+ +
Sbjct: 150 FFPFNQSGYGQSKAAL-----NFTMKEISFELQDEGFIVISI 186
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 270 SCVQLFVTNVTFKMLRFLMLDENL 199
S + LF++ ++FK L F + D NL
Sbjct: 543 SYIDLFISLMSFKNLNFKLFDYNL 566
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 251 TKSCTQDLDCPYT 289
TKSC+ +DCP+T
Sbjct: 281 TKSCSAAVDCPHT 293
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 309 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 184
FF + YGQS++ + N T K + F + DE V+ +
Sbjct: 150 FFPSSQSAYGQSKAAL-----NYTMKEISFELQDEGFIVISI 186
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 346 SNIEIEIYGMEGIPPEDVKEHEKQKS 423
S + ++G G PED + H K+K+
Sbjct: 642 STPDFAMFGNGGFSPEDTRFHRKKKT 667
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 253 KKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEHEK 414
+KL + HC + K P+ +P + N+E + M G+P + + H +
Sbjct: 96 EKLLPRDNVKTHCPKRSASCCGKKPDVMPLKINLESQTDFM-GMPLQSQRPHSE 148
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 323 TLSMASLCTCMQCMDSPGPV 264
TL LC QC DS P+
Sbjct: 463 TLEKGELCEVAQCKDSTAPI 482
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 196 EKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDK 321
+ ++I Q A H + KKL L + + +HKE+ DK
Sbjct: 266 QALVIMIQFASHLSLYNLCKKLCGQVCLMVKDLNLHKESTDK 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,010
Number of Sequences: 5004
Number of extensions: 31393
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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