Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0433
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...   122   2e-28
07_03_1165 - 24459156-24460139                                         37   0.006
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    29   1.5  
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    28   3.6  
08_01_1059 - 10775143-10776063                                         27   6.2  
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           27   6.2  
07_01_0867 - 7198874-7199764                                           27   8.2  
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634...    27   8.2  

>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score =  122 bits (293), Expect = 2e-28
 Identities = 49/75 (65%), Positives = 63/75 (84%)
 Frame = +1

Query: 184 QFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIE 363
           +FDDEKIL+QHQKAKHFKCH+CHKKL T  G++IH +QVHKE++ KVPN+ P R + EIE
Sbjct: 19  EFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIE 78

Query: 364 IYGMEGIPPEDVKEH 408
           I+GM+GIPP+ +  H
Sbjct: 79  IFGMQGIPPDVLAAH 93



 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 129 MGRKKKKASKPWCWYCNR 182
           MG+KKK+  K +C+YC+R
Sbjct: 1   MGKKKKRVEKVFCYYCDR 18


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 169 GIVTGQFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLP 339
           G V G  DD+   +  ++   F CH+C+K+  +   +  H M+VH    +K P SLP
Sbjct: 92  GDVIGAGDDDAAPVAARREASFPCHLCNKEFGSRKAVHGH-MRVHHAENEKEPMSLP 147


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 193 DEKILIQHQKAKH----FKCHICHKKLYTGPGLSIHCMQVHKEAI 315
           D  +++  +   H     KC IC ++     GL +H  +VHK+ +
Sbjct: 446 DGSVMVLREDGTHPSPGLKCKICSQEFSDDQGLGLHWTEVHKKEV 490


>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 206 RIFSSSNCPVTIPAPRFGCLLLL 138
           R+FSSS+ P   P+PR  CL  L
Sbjct: 32  RLFSSSSSPSPSPSPRAACLRAL 54


>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 232 FKCHICHKKLYTGPGLSIHCMQVHK 306
           FKC+ C +K YT   L  H    HK
Sbjct: 107 FKCNYCQRKFYTSQALGGH-QNAHK 130


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 187 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 303
           F  +  L  H   +HF CHIC +       LS    Q H
Sbjct: 154 FYGDNELYTHMTREHFSCHICQRYSARLQSLSYLVRQQH 192


>07_01_0867 - 7198874-7199764
          Length = 296

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 195 VVKLPCYNTSTKVWM 151
           VVKLPC+  +T++W+
Sbjct: 120 VVKLPCFEKATELWL 134


>04_04_0050 -
           22360294-22361804,22362087-22362378,22363367-22363420,
           22363627-22363718,22364713-22364915,22365892-22366133,
           22366205-22366330,22366800-22366907,22367394-22367457,
           22367543-22367681,22367867-22368038,22368198-22368482
          Length = 1095

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 KHFKCHICHKKLYTGPGLSIH 288
           K F C IC  +L +G G+SIH
Sbjct: 391 KLFICAICQVELESGQGISIH 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,893,539
Number of Sequences: 37544
Number of extensions: 186918
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)