Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0433
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 116 7e-27
At3g16300.1 68416.m02057 integral membrane family protein contai... 30 0.74
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 29 0.98
At5g28720.1 68418.m03528 hypothetical protein 28 3.0
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 3.0
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 27 4.0
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 27 4.0
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 27 4.0
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 27 5.2
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 27 5.2
At2g32920.1 68415.m04036 thioredoxin family protein similar to S... 27 5.2
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 27 6.9
At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containi... 26 9.1
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 26 9.1
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 116 bits (279), Expect = 7e-27
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +1
Query: 184 QFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIE 363
+FDDEKIL+QHQKAKHFKCH+CHKKL T G+ IH +QVHKE + KVPN+ R + +IE
Sbjct: 20 EFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHKENVTKVPNAKDGRDSTDIE 79
Query: 364 IYGMEGIPPEDVKEH 408
IYGM+GIPP + H
Sbjct: 80 IYGMQGIPPHVLTAH 94
Score = 32.7 bits (71), Expect = 0.11
Identities = 12/19 (63%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Frame = +3
Query: 129 MGRKKKKAS-KPWCWYCNR 182
MG+KKK+A+ K WC+YC+R
Sbjct: 1 MGKKKKRATEKVWCYYCDR 19
>At3g16300.1 68416.m02057 integral membrane family protein contains
TIGRFAM TIGR01569 : plant integral membrane protein
TIGR01569; contains Pfam PF04535 : Domain of unknown
function (DUF588); At2g38480, At1g45222 and others
share this domain structure; distantly related to
GP|14030504 salicylic acid-induced fragment 1 protein
{Gossypium hirsutum}
Length = 212
Score = 29.9 bits (64), Expect = 0.74
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 318 VYGFFMYLHAVYGQSRSCVQLFVTN---VTFKMLRFLMLDENLFVVKLPCYNTSTKVW 154
+YGF LHAV+ S S + L V + V + +++ L++ + K P T T+ W
Sbjct: 77 LYGFEFQLHAVWSLSDSLIYLVVVSSATVLYSLIQ-LIISGTRLMRKSPVIPTRTQAW 133
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 29.5 bits (63), Expect = 0.98
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 175 VTGQFDDEKILIQHQKAKHF-KCHICHKKLYTGPGLSIHCMQVHKEAIDKVPN 330
+T + D K L K HF KC IC + TG L H M+ H+ ++ P+
Sbjct: 74 LTVEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGH-MRRHRSSMTVEPS 125
>At5g28720.1 68418.m03528 hypothetical protein
Length = 142
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 325 PNSLPNRSNIEIEIYGMEGIPPEDVKEH 408
P++L + ++E E Y +G+P +D++EH
Sbjct: 87 PHTLGVQLDLEQEPYDDDGVPADDIEEH 114
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 229 HFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSL 336
HF CH+C K L +H M H K P SL
Sbjct: 144 HFSCHVCFKTFNRYNNLQMH-MWGHGSQYRKGPESL 178
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 226 KHFKCHICHKKLYTGPGLSIHCMQVHKEAI 315
K KC ICH++ TG L H ++H E +
Sbjct: 796 KIHKCSICHREFSTGQSLGGH-KRLHYEGV 824
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 271 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 408
PG+ + ++ EA+D VP +L S ++ I + + + +KE+
Sbjct: 361 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 405
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 271 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 408
PG+ + ++ EA+D VP +L S ++ I + + + +KE+
Sbjct: 437 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 481
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +1
Query: 184 QFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIE 363
Q DD + L + K H+ L G+ I + ++ I S N++ +
Sbjct: 127 QLDDGRTLADYNIQKESTLHLV---LRLRGGMQIFVRTLTRKTIALEVESSDTTDNVKAK 183
Query: 364 IYGMEGIPPE 393
I EGIPP+
Sbjct: 184 IQDKEGIPPD 193
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 220 KAKHFKCHICHKKLYTGPGLSIHCMQVHK 306
K K FKCH C + T L H HK
Sbjct: 51 KEKRFKCHYCFRNFPTSQALGGH-QNAHK 78
>At2g32920.1 68415.m04036 thioredoxin family protein similar to
SP|Q15084 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
Thioredoxin
Length = 440
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 315 YGFFMYLHAVYGQSRSCVQLFVTNVTFKML 226
+GFF A+YG S VQL +N K+L
Sbjct: 16 FGFFDLSSALYGSSSPVVQLTASNFKSKVL 45
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 235 KCHICHKKLYTGPGLSIHCMQVHK 306
KC++C K +Y LSI M HK
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHK 32
>At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 890
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 289 CMQVHKEAIDKVPNSLPNRSNIEIEIYGMEG 381
C+Q+ ++ D++P N+ I YGM G
Sbjct: 567 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 315 YGFFMYLHAVYGQSRSCVQLFVTNVTFKMLRFL 217
Y FF L A+YG+S+ V + N F M L
Sbjct: 181 YRFFRQLEAIYGESKDSVSCY-NNTQFIMTNAL 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,282
Number of Sequences: 28952
Number of extensions: 160447
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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