Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0431
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 1.8
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 1.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 3.2
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 3.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 4.2
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 25 4.2
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 4.2
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 24 5.5
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 5.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 24 5.5
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 24 7.3
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 24 7.3
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 24 7.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 9.6
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 23 9.6
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 144 DKGHISPQCEQRPMSL 191
+ GH+S QCEQ P L
Sbjct: 131 ENGHLSGQCEQNPKGL 146
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 15 TELNSTMQVKWDRQVPVKFLLSETPKYCFAIAIDKLYE 128
TE++ T QV + +V ++ L +TP Y I DK +E
Sbjct: 74 TEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWE 111
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 3.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 87 VFRTTKTSPALVCPISLASSSSVRLV 10
V+R +TS + +CPI + + ++L+
Sbjct: 298 VYRDDRTSVSFICPIGIQTHEVIKLL 323
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 96 CFAIAIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWT 209
C A ++DK++ + V+ + S QC+Q P+S +SW+
Sbjct: 75 CVA-SVDKVFVLDIVQHDYYASIQCDQDPLS--SISWS 109
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 140 HIIVFVELVYGNSEAILWCFGQQKLHRHLSVPFH 39
+I F+E + N +I + F + +H H S P H
Sbjct: 405 NIEAFLEYLRSNDLSINFQFYPKNVHLHTSTPLH 438
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 146 ILHIIVFVELVYGNSEAILWC 84
I H+++ + L+ G AI WC
Sbjct: 337 IAHLLISIPLIIGVHVAIAWC 357
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 132 NDVEDKGHISPQCEQRPMSLKYMS 203
ND + KG++ P C ++ SL +S
Sbjct: 129 NDFDSKGYVCPFCNKKFSSLDVLS 152
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 139 WRIRATSARSANRGRCLSSICRGPWSTACSPTRR*W-FEST 258
W A N +C++ C G + CS + W +E+T
Sbjct: 368 WECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEAT 408
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 15 TELNSTMQVKW----DRQVPVKFLLSETPKYCFAIAIDK 119
T +ST + W +++ PV+ +SE K+C+ A D+
Sbjct: 158 THTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDE 196
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 174 QRPMSLKYMSWTLVD 218
QR +SLK+++W L+D
Sbjct: 1025 QRKLSLKFLAWYLLD 1039
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 23.8 bits (49), Expect = 7.3
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 42 KWDRQVPVKFLL 77
KWD+++PV FL+
Sbjct: 223 KWDQEIPVLFLI 234
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 209 GPRHILERHRPLFALRADVALILHIIVFVELVYGN 105
GP I+++ + + VA ILH V +++ +GN
Sbjct: 700 GPSLIVDKTQTIVVPPKAVARILHTHVVIDISHGN 734
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 23.8 bits (49), Expect = 7.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 108 AIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWTLVDSVLSDKEVMVRVHGQYKHSW 278
A ++LYE+ +DK + + + + Y SWTL +S+L+ + + HSW
Sbjct: 38 APNELYEFQVTKDKEY-NEKFYFAVLDHVY-SWTLQNSLLTRISIPLESSPSEPHSW 92
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 108 AIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWTLVDSVLSDKE 239
A++ LY ++D GHI+ Q MSL + +L +VL+ +E
Sbjct: 487 ALEHLYSIGALDDNGHINDLGYQ--MSLIPLLPSLARAVLAARE 528
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = -3
Query: 254 DSNHHLLVGEHAVDQGPRHILERHRPLFALRAD 156
D +HL+ + H+L H+ LF D
Sbjct: 129 DQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCD 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,073
Number of Sequences: 5004
Number of extensions: 24729
Number of successful extensions: 58
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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