Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0431
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 32 0.10
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 28 1.7
SB_57324| Best HMM Match : ig (HMM E-Value=1e-26) 28 2.2
SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 5.1
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 27 5.1
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 26 6.8
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 26 6.8
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 26 6.8
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 129 YNDVED-KGHISPQCEQRPMSLKYMSWTLVDSVLSDKEVMVRVHGQ 263
YN VED KG I C RP+S + L+ S + V + +GQ
Sbjct: 506 YNMVEDMKGKIRVYCRARPLSKSELDRNLIQSAVDGYNVCIFAYGQ 551
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 99 SNTLVFRTTKTSPALVCPISLASSSSVRLVQ 7
SNTLV +TKTS LV I L + + ++ Q
Sbjct: 2691 SNTLVLLSTKTSVMLVLDIDLVAKTHTKVCQ 2721
>SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)
Length = 947
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -3
Query: 251 SNHHLLVGEHAVDQGPRHILERHRPLFALRADVALILHIIVFVELVYGNSEAI 93
+ HHL + V +++ + H + A + LI+H+ V + N +A+
Sbjct: 473 NGHHLRIKNARVKDSGKYLCQAHNSFGMINASITLIVHLKVQAPVFRRNIKAL 525
>SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 85 HQSIASLLP*TSSTNTMMWRIRATSARSANRGRCLS 192
HQ IAS LP T+S M +TS +N C+S
Sbjct: 205 HQRIASTLPVTASHPIYMQATPSTSGEPSNVNSCVS 240
>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 245 HHLLVGEHAVDQGPRHILERHRPLFALR 162
H L GEH D GP H+L++ L R
Sbjct: 496 HSLEQGEHYTDSGPYHLLKQGETLHRQR 523
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 93 TLVFRTTKTSPALVCPISLASSSSVRLVQTP 1
TL+ R +T+PA P SLA+ +S ++TP
Sbjct: 110 TLLVRPLETTPAPTTPTSLATPASGPPIRTP 140
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 194 VYVVDPGRQRAL-RQGGDGSSPRSI*AQLASWRRG 295
+Y D GRQ + R G DGSSP+ I +W G
Sbjct: 2753 LYYTDWGRQPHIGRVGLDGSSPQRIVESKLAWPNG 2787
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 93 YCFAIAIDKLYEYNDVEDKGHISPQCEQRPMSLKYM 200
YC I +++L ++ K HI+P EQR + L +M
Sbjct: 237 YCDEILLNELVDF-----KKHINPMLEQRGVKLSFM 267
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 93 TLVFRTTKTSPALVCPISLASSSSVRLVQTP 1
TL+ R KT+PA P S A+ +S ++TP
Sbjct: 627 TLLVRPLKTTPAPTTPTSPATPASDAPIRTP 657
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -3
Query: 293 HDASSPAVLILTVDSNHHLLVGEHAVDQGPRHILERHRPLFALRADVALILH 138
H SS + +I+ + +HH + P I+ H P ++ + I+H
Sbjct: 316 HHPSSSSSIIIIIHHHHHPSSSSSIIHHHPSSIIIHHHPSSSIIHHPSSIIH 367
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 72 LLSETPKYCFAIAIDKLYEYNDVEDKGHISPQCEQ 176
L+ E+ FA+ +++++++ VE G + +C Q
Sbjct: 52 LIDESVSAMFAVVVEQIHKFAQVEGMGGANGECYQ 86
>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 114 DKLYEYNDVEDKGHISPQCEQRPMSLKYMSWTLVDSVLSDKE 239
+K YN+V+ K +++ S + W D +SDK+
Sbjct: 225 NKATSYNNVDKKATFYNNVDKKATSYNNVDWCYEDEGISDKD 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,618,935
Number of Sequences: 59808
Number of extensions: 207202
Number of successful extensions: 599
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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