Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0431
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   0.37 
Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical p...    27   4.5  
U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-bie...    27   4.5  
L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = +3

Query: 69  FLLSETPKYCFAIAIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWTLVDSVLSDKEVMV 248
           F L   P   FA  ++ + + N+  +    S +CE +   +K   + ++   L D E + 
Sbjct: 24  FKLLNLPYLAFAKVLNGM-KVNEAVNLSQTSIKCEIKMKRVKKRIYKIIIENLDDCEEID 82

Query: 249 RVHGQYKHSWRAGVVDVKLDLXPFYDY 329
             + + KH  R  +V+ K D+   Y+Y
Sbjct: 83  EENTEIKHLQRIILVNKKCDVIDAYNY 109


>Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical
           protein C36B1.14 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 176 EADVSQVYVVDPGRQRALRQGGDGSSPRSI 265
           E  ++++  VDP R + + +  DGS P+++
Sbjct: 7   EKKLTKIVGVDPYRNKKVNRNADGSGPKTV 36


>U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-biedl
           syndrome) proteinprotein 2 protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 44  MGQTSAGEVFVVRNTKVLLRYCHRQALR 127
           +GQ  + ++ V+ NT++L ++C    LR
Sbjct: 447 LGQVDSNKLMVMENTRILPKFCRFTLLR 474


>L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical
           protein C29E4.10 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 182 RPLFALRADVALILHIIVFVELVYGNSEAILWCFGQQKLHRHLSVPFHLHRRVQFG 15
           R  +A+ AD+ +I    +FVE+ + N +  ++      + R +   F   R+V+FG
Sbjct: 406 RTPYAVMADIEVINCRGIFVEIEFSNKKVTIF---SDFVDRSIIAEFKARRKVEFG 458


>Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical
           protein R90.1 protein.
          Length = 776

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 162 PQCEQRPMSLKYMSWTLVDSVLSDKEVMVRVHGQYK 269
           PQ  +  +S+K ++   VD   S+K + + ++ +YK
Sbjct: 433 PQVAESSLSIKRVAGLPVDKTRSNKSITLSINNRYK 468


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 107 NSEAILWCFGQQKLHRHLSVPFHLHRRVQ 21
           + ++ +W FG Q ++RH+   F  +RRVQ
Sbjct: 517 SDDSDVWAFGAQHVYRHM---FSKNRRVQ 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,864
Number of Sequences: 27780
Number of extensions: 146763
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)