Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0431
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   5.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   9.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   9.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    20   9.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   9.4  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 171 EQRPMSLKYMSWTLVDSVLSDKEVMVRVHGQYKHSWRAGVVDVKLDLXPFY 323
           +++   LK+ SWT  D    D   M    G       + VVDV +DL  FY
Sbjct: 163 DEQTCVLKFGSWTY-DGFKVDLRHMDEKSG-------SNVVDVGVDLSEFY 205


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 135 DVEDKGHISPQC 170
           D EDKG + P C
Sbjct: 88  DAEDKGLLKPGC 99


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 102 AIAIDKLYEYNDVEDKGHIS 161
           ++ + +LYE++D E   HIS
Sbjct: 101 SLKVTRLYEFSDNELLVHIS 120


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 189 LKYMSWTLVDSVLSDKEVMVRV 254
           L  ++WT  + + SDK   V +
Sbjct: 11  LSLLTWTYAEELYSDKYDYVNI 32


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 146 ILHIIVFVELVYGN 105
           I+++I+FV  ++GN
Sbjct: 45  IIYMIIFVTGIFGN 58


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 282 AGVVDVKLDLXPFY 323
           + VVDV +DL  FY
Sbjct: 192 SNVVDVGVDLSEFY 205


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 316 GMRSNLTSTTPARQ 275
           G  SNL ST+P+ Q
Sbjct: 77  GCHSNLLSTSPSGQ 90


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 189 LKYMSWTLVDSVLSDKEVMVRV 254
           L  ++WT  + + SDK   V +
Sbjct: 11  LSLLTWTYAEELYSDKYDYVNI 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 67   SFCCPKHQSIASLLP*TSSTNTMMWRI 147
            S   PK++    L   T+ TN  MW +
Sbjct: 1069 SLALPKNEGPFRLNVETAKTNEEMWEL 1095


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS
          protein.
          Length = 80

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 49 SHFTCIVEFSSVSAN 5
          SHF  +V  +SVS N
Sbjct: 40 SHFASLVRNASVSGN 54


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 316 GMRSNLTSTTPARQ 275
           G  SNL ST+P+ Q
Sbjct: 77  GCHSNLLSTSPSGQ 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,309
Number of Sequences: 438
Number of extensions: 1458
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)