Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0430
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.0  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   5.5  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   5.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   5.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    24   9.6  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    24   9.6  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
 Frame = -2

Query: 316 YTIATSVSGPLKDTLLLKKRVSNQTNVFPSAQSLQLTNKRH-----HVCAVVVSIHRHHN 152
           +T+  +V+ P     L++       NV P AQSLQL          H+     S H++  
Sbjct: 256 FTLPNAVT-PAAQAPLIRSVSEYPANVSPPAQSLQLPKSTSNPADLHLSIASASSHKNIF 314

Query: 151 EWLQNISRTPYNCATN*HMRSEYL*NRTFTH 59
             L   S   +  +T    R   + NR+F H
Sbjct: 315 SGLDVFSNVFHGPSTTLRDREHDMRNRSFDH 345


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 QPHRRGVACL*AEGTAHLERHL 243
           QP +R +AC    G  H+ +HL
Sbjct: 517 QPEKRNLACGGLNGNVHIYKHL 538


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 114 VQQIDICVQNIYKIVHLLTLNKNSKENHPKTYTIDD 7
           V+Q  +  +    + +L++L      NH   YT+DD
Sbjct: 104 VKQSSLAFEKASVLFNLVSLLSRMAANHASAYTVDD 139


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 309 SLLLCQDL*RTHCC*KREFRTKQMSFQVRSPFS 211
           SL+LC    R   C KRE R+K+      SP+S
Sbjct: 479 SLILCT---RNGTCWKRELRSKKREKSSSSPYS 508


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 149  MVTKHFTNTLQLCNKLTYAF 90
            MVT H  +T Q C  L Y+F
Sbjct: 2032 MVTNHTKSTRQTCRHLYYSF 2051


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 6/25 (24%), Positives = 19/25 (76%)
 Frame = +1

Query: 7   VINCISFWMIFFRIFIQSE*MYDFI 81
           +I+  SFW+ F+++ ++ + +Y+++
Sbjct: 314 LISLKSFWLSFYKVSLRYDALYEYL 338


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 341 AQQFSLLVVYDRYFCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQ 201
           AQ  +L   +DR   +R ++G    E+  + P+K + +  +PS H +
Sbjct: 469 AQHTTLPSCHDR-IPIR-YKGQLYFEQPDYVPSKMMDELMIPSKHNR 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,332
Number of Sequences: 5004
Number of extensions: 38177
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)