Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0430
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1) 30 0.79
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 30 1.0
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 28 3.2
SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 28 4.2
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14) 27 5.6
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 27 7.4
SB_8567| Best HMM Match : EB (HMM E-Value=2.3) 27 7.4
SB_40862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_32055| Best HMM Match : OTU (HMM E-Value=5.5) 27 9.7
>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
Length = 614
Score = 30.3 bits (65), Expect = 0.79
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 302 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 195
FC + G+T V+ ES PN C S PS +T
Sbjct: 575 FCQKISTGNTQVQPESLSPNICCSHLPQPSCVSPST 610
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 302 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 195
FC + G+T V+ ES PN C S PS +T
Sbjct: 1093 FCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTST 1128
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 232 PSAQSLQLTNKRHHVCAVVVSIHRHH 155
PS+ S+ + + HH + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169
>SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 268 LKKRVSNQTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQNISR 128
+ KR+ NVFP Q+ +KR VC V + ++ ++Q SR
Sbjct: 299 VSKRIPLCPNVFPCVQTYSSMSKRIPVCPNVFPCVQTYSRFVQTYSR 345
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 268 LKKRVSNQTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQNISRTP 122
+ KR+ NVFP Q+ +KR VC+ V + ++ + I P
Sbjct: 442 VSKRIPISPNVFPYVQTYSRMSKRIPVCSNVFPYVQTYSRMFKRIPMCP 490
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 208 TNKRHHVCAVVVSIHRHHNEWLQNISRTPYNCATN*HMRSEY-L*NRTFTHFE*KFER 38
T+ +HH + +I R H+E + ISRT + TN + Y + N + TH E ER
Sbjct: 223 TSLQHH--EHITTISRTHHEHITTISRTHHYNITNTSRTNHYNITNTSRTHHEALRER 278
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 208 TNKRHHVCAVVVSIHRHHNEWLQNISRTPYNCATN*HMRSEY-L*NRTFTHFE*KFER 38
T+ +HH + +I R H+E + ISRT + TN + Y + N + TH E ER
Sbjct: 156 TSLQHH--EHITTISRTHHEHITTISRTHHYNITNTSRTNHYNITNTSRTHHEALRER 211
>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
Length = 453
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -2
Query: 256 VSNQTNVFPSAQSLQLTNKR--HHVCAVVVS 170
+ +QTNV+P+A+ ++ N R H + AV+V+
Sbjct: 231 ILDQTNVYPNARRRKMNNFRGFHRIAAVLVT 261
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +1
Query: 265 STTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLXRIV 399
S VC SK TQ Y+ K EHKPDV WP+ + L V
Sbjct: 384 SVAVCWSKE-TQL-SIYSLVKTAKDIEHKPDVVWPSAQPILVSTV 426
>SB_8567| Best HMM Match : EB (HMM E-Value=2.3)
Length = 179
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 124 VFVKCFVTIHCDAGGC*LQPHRRGVACL*AEGTAHLERHLFG 249
V VKC HC+ C H GV C + G AH E +FG
Sbjct: 124 VKVKCPTGAHCEGVECSTGTHCEGVEC--STG-AHCEGGVFG 162
>SB_40862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 140 KHFTNTLQLCNKLTYAFRI 84
KHFT+TL N LTY+F I
Sbjct: 2 KHFTDTLISANILTYSFCI 20
>SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)
Length = 263
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 103 NLLHSCKVFVKCFVTIHCDAGGC 171
NLL C + V CF+ HC C
Sbjct: 104 NLLSLCYIPVNCFIICHCLLHSC 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,287,386
Number of Sequences: 59808
Number of extensions: 304779
Number of successful extensions: 794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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