Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0430
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67560.1 68414.m07697 lipoxygenase family protein similar to ...    28   2.6  
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai...    27   4.5  
At5g37410.1 68418.m04500 hypothetical protein contains Pfam PF04...    27   7.9  

>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
           13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
           gi:1654140 [Lycopersicon esculentum]
          Length = 917

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 193 HVCAVVVSIHRHHNEWLQ-NISRTPYNCATN 104
           HVC+    +H+  N WL+ + S  PY  ATN
Sbjct: 561 HVCSNDAGVHQLVNHWLRTHASMEPYIIATN 591


>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 381 TFKCRPSYVWLMFGTAVFLVGSIRSLL 301
           TF    +  WL FG+AV L+GS+  ++
Sbjct: 282 TFNIALALPWLWFGSAVELIGSVLGII 308



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 381 TFKCRPSYVWLMFGTAVFLVGSIRSLL 301
           TF    +  WL FG+AV LVG++  LL
Sbjct: 327 TFYVPLALPWLWFGSAVELVGAVLGLL 353



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 354 WLMFGTAVFLVGSIRSLLL 298
           WL FG+AV L+G++  LL+
Sbjct: 245 WLWFGSAVELIGAVVGLLI 263


>At5g37410.1 68418.m04500 hypothetical protein contains Pfam
           PF04510: Family of unknown function (DUF577);  common
           family comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 615

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 15  LYKFLDDFLSNFYSK*VNVRFYKYSERICQFVAQL 119
           L + L+DF   F+S+ +N+  YKYS+  C FV  L
Sbjct: 252 LVRGLEDF-ERFFSREMNL--YKYSKDQCHFVLDL 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,668,829
Number of Sequences: 28952
Number of extensions: 194031
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)