Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BRW7 Cluster: Chromosome undetermined scaffold_123, w...    32   4.0  
UniRef50_Q32N87 Cluster: MGC80064 protein; n=4; Tetrapoda|Rep: M...    31   9.3  

>UniRef50_A0BRW7 Cluster: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 781

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -3

Query: 228 YSKYHEKETKVTSEITNGLKDKTQCLSLKSDRNKKIQLLYLVQF*KISLYRVNYIIIIST 49
           +S + +   K  S +++ LK  T C  +K D NK +  + ++   ++S   +  IIIIST
Sbjct: 659 HSDFTDVYQKTLSNLSSLLK-ATNCTFMKEDLNKMLDGMCVISSYQLSKISILLIIIIST 717

Query: 48  FYL 40
            +L
Sbjct: 718 LFL 720


>UniRef50_Q32N87 Cluster: MGC80064 protein; n=4; Tetrapoda|Rep:
           MGC80064 protein - Xenopus laevis (African clawed frog)
          Length = 642

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 222 KYHEKETK-VTSEITNGLKDKTQCLSLKSDRNKKIQ 118
           K   KE K V SEI  G KDK + +S  SD +KK++
Sbjct: 374 KKQVKEVKPVASEIKKGKKDKVRAISDDSDSDKKVK 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,943,850
Number of Sequences: 1657284
Number of extensions: 5559239
Number of successful extensions: 12394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12392
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)