Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   4.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   8.1  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   8.1  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 285 YILIR*LDRPLAIVSDCVKYSKYHEKETKVTSEITNGLKDKTQCLSLK-SDRNKK 124
           Y  +  ++    ++S  +K+     KE K+  E+T G   KT+    K  ++N+K
Sbjct: 135 YAFVEFINPKTDVISKALKFHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRK 189


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 131  LRSDFNDKHCVLSFNPFVISEVTLVSFSWYLEYFTQSDTIARGLSSY 271
            L  D+ D++CV   +  VI  + LVS SW  E F  S+  +  L+ +
Sbjct: 1097 LTIDYLDRNCVTCSDKHVIISLLLVS-SW--EKFLTSNNYSNYLADF 1140


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 90  ISLYRVNYIIIISTFYLIM*WHYFMS 13
           IS ++ N    +S+ Y +  WHY++S
Sbjct: 262 ISFFQFNVTSGLSSLYGLNAWHYYLS 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,460
Number of Sequences: 5004
Number of extensions: 27285
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)