Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0159 + 5105272-5106360,5107605-5107769                           28   3.4  
04_03_0882 + 20535238-20535269,20535406-20535486,20535847-205359...    27   7.8  

>09_02_0159 + 5105272-5106360,5107605-5107769
          Length = 417

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 69  NLHDKVIFFKIVLNIKVVFSYYGLILMINIAFYLL 173
           NL D+V FFK  L +K  F+Y  ++ +   + Y L
Sbjct: 126 NLLDQVRFFKAELWVKFYFNYVPVVYLSEASIYAL 160


>04_03_0882 +
           20535238-20535269,20535406-20535486,20535847-20535903,
           20535991-20536054,20536326-20536532,20536838-20536891,
           20536933-20537052
          Length = 204

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  KIVLNIKVVFSYYGLILMINIAFYLLIRL*FRK*LWFP 209
           +I+L I V+F     +L   I  Y  +RL F   LW+P
Sbjct: 38  RIILVILVIFDDIAGVLTSKIPMYSELRLAFLVYLWYP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,861,871
Number of Sequences: 37544
Number of extensions: 126166
Number of successful extensions: 211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)