Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    28   2.3  
AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = -3

Query: 348 FTNSPIIITXKLCVFIYTS*IYILIR*LDRPLAIVSDCVKYSKYH----EKETKVTSEIT 181
           F  S +++   +C++I       L   L  PL I+S  + YSK+     E+ETK+ ++IT
Sbjct: 236 FILSYLLVNIGVCLYIQWD--VTLFMCLAIPLLIISR-ILYSKWFANTMEEETKLQNKIT 292

Query: 180 NGLKDKTQCLS 148
           N + +   C++
Sbjct: 293 NLVNETFNCIT 303


>AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical
           protein H27M09.3 protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 213 EKETKVTSEITNGLKDKTQCLSLKSDRNKKIQL 115
           E+E ++  E+  GL+D+ +CL+    R KK  L
Sbjct: 175 EEEKRILEEVVEGLRDQKKCLA-DDIRTKKATL 206


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 353 VNLQTALLS*PXNYVYLFTHLKFT 282
           VNLQ+   S P NY++L T + FT
Sbjct: 219 VNLQSVQRSKPHNYIFLQTMVVFT 242


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 353 VNLQTALLS*PXNYVYLFTHLKFT 282
           VNLQ+   S P NY++L T + FT
Sbjct: 217 VNLQSVQRSKPHNYIFLQTMVVFT 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,873,580
Number of Sequences: 27780
Number of extensions: 144290
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)