Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.3  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 101 CTKYKSCIFLLRSDFNDKH 157
           C +  SC + L+  F DKH
Sbjct: 11  CRRNFSCYYSLKRHFQDKH 29


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = -2

Query: 325 NHXIMCIYLHILNLHLNSIARQTSRDSVRLR 233
           +H ++C+Y+ +  +      +QT+   V +R
Sbjct: 336 DHAVLCVYMGLSMVEAIKYVQQTTNSPVDMR 366


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y    Y  KLY
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y    Y  KLY
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y  K Y++  Y
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y  K Y++  Y
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y  K Y++  Y
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  LHN*IKSRNYNNVIYTIK*YFSKLY 105
           +HN     NYNN  Y  K Y++  Y
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINY 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,066
Number of Sequences: 438
Number of extensions: 2325
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)