Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0429
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    27   3.8  
At5g45600.1 68418.m05603 YEATS family protein contains Pfam doma...    27   3.8  
At1g22000.1 68414.m02752 F-box family protein contains F-box dom...    27   5.0  

>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
           microtubule-associated motor KIF4 , Mus musculus,
           PIR:A54803
          Length = 1294

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 316 IMCIYLHILNLHLNSIARQTSRDSVRLRE 230
           I+C  LH+++L  +  A++T  D +RL+E
Sbjct: 252 ILCAKLHLVDLAGSERAKRTGADGMRLKE 280


>At5g45600.1 68418.m05603 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 268

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 113 KSCIFLLRSDFNDKHCVLSFNPFVISEVTLVSFSWYLEYFTQSDTIARGLSSY 271
           K  +F L S FN    V+   PF +SE     F   +     SD   + LS Y
Sbjct: 86  KKVVFQLHSSFNSPTRVIEEPPFEVSESGWGEFEIAMTLHFHSDVCDKPLSLY 138


>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 727

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 131 LRSDFNDKHCVLSFNPFVISEVTLVSFSWYLEYF 232
           LRS  + KH  L F+  +++    + FSW +E++
Sbjct: 302 LRSLSSVKHLFLLFSKSMVACCNAIKFSWLIEFY 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,055,539
Number of Sequences: 28952
Number of extensions: 120924
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)