Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0427
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 216 7e-57
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 216 7e-57
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 0.84
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 0.84
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 1.9
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 1.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.4
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 3.4
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 4.5
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 28 4.5
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 5.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 5.9
At4g04920.1 68417.m00715 expressed protein 27 7.9
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 7.9
At1g76010.1 68414.m08825 expressed protein 27 7.9
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 216 bits (528), Expect = 7e-57
Identities = 101/175 (57%), Positives = 118/175 (67%)
Frame = +3
Query: 9 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 188
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 30 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 89
Query: 189 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 368
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 90 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 149
Query: 369 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRN 533
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRN
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 204
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 216 bits (528), Expect = 7e-57
Identities = 101/175 (57%), Positives = 118/175 (67%)
Frame = +3
Query: 9 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 188
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 29 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 88
Query: 189 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 368
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 89 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 148
Query: 369 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRN 533
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRN
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 203
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 0.84
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 230 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 409
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 410 S 412
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 0.84
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 230 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 409
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 410 S 412
S
Sbjct: 523 S 523
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 246 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 127
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 246 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 127
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 6 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 101
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 6 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 101
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 436 CLVLLISWTLSATTKGSSGIFS 371
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 234 HHDTCYRRHPDRTYEYHHHGHAEF 163
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 6 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 101
PLPF K+P +PD++ H + NS+ C+
Sbjct: 367 PLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 263
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 234 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 151
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 24 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 185
K P D + + +S S S VS EA Q++A +WG+G RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 141 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 236
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 102 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 233
S+ G + G GR R R RGGG R G G F N G
Sbjct: 302 SQGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,399,657
Number of Sequences: 28952
Number of extensions: 228757
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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