Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0426
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0249 + 27868897-27871599                                         30   2.1  
01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402...    30   2.1  

>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 485 STYSNDHHHQVKSRQYIWTSLNSKYWFTESMACLV 381
           STY   HHH+    Q I   L+  Y FT +  C+V
Sbjct: 117 STYIGHHHHRYSITQTISFILDGYYSFTSNDLCMV 151


>01_05_0028 -
           17337455-17337664,17338407-17338697,17339926-17340218,
           17340812-17340959,17341177-17341219,17341985-17342307
          Length = 435

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 343 ALFNFLVFYQFNGTRQAILSVNQYFEFKLVQMY 441
           A  NF V Y  +G  +++ S++QYFEF LV ++
Sbjct: 328 AALNFFVNYA-DGAVESLWSIDQYFEFVLVLLF 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,602
Number of Sequences: 37544
Number of extensions: 213928
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)