Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0425
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    28   0.65 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    28   0.65 
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   1.1  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   6.1  

>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 239 NKETLRRAVLRPPGVPLLTISNH 307
           N + L++ + + PG+P+L+++NH
Sbjct: 158 NDKNLKQRIRKIPGIPILSVANH 180


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 196 KKSHDGDCERARTIPQPPRV 137
           K  HDGD  RAR +PQ P +
Sbjct: 127 KIPHDGDVNRARYMPQKPEI 146


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 386 SLAAHDICLTNTLHSCFFALGKCVPVVRGAGV 481
           S+A   ICLT+    C F LG  V ++ G  +
Sbjct: 7   SIAVASICLTSAFLGCVFGLGFFVWIIYGYSI 38


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 265 HRSAERLFVVHCRFI*EFYYNFAKKSHDGDCERARTIPQPPRVSQPRDNPTDVVAHD 95
           +R+ +R +V +CR   +F+   ++   DG     R +  PP   +     T VV  D
Sbjct: 327 YRALDRTYVQNCRIKLKFHDIPSRTKEDGKKSAVRRVVLPP--EEAYAEATSVVLRD 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,196
Number of Sequences: 5004
Number of extensions: 31640
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)