Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0425
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1510 - 34088431-34088718,34089158-34089295,34089413-340894...   104   4e-23
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    78   4e-15
06_03_1136 - 27897822-27898235,27898344-27898488,27899127-278992...    28   3.5  
11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997     27   8.0  
01_01_0248 + 2041015-2041762,2042112-2042149                           27   8.0  

>04_04_1510 -
           34088431-34088718,34089158-34089295,34089413-34089498,
           34090339-34090466,34091656-34091900
          Length = 294

 Score =  104 bits (249), Expect = 4e-23
 Identities = 53/115 (46%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = +2

Query: 143 GRLWYCASSLTVAVVGLFSKIIIEFLNKTTVYNKETLRRAVL-RPPGVPLLTISNHHSCF 319
           G L     +  +A VG  +K     LN TTV+N + L R V  RPPG PLLT+SNH S  
Sbjct: 24  GHLGGFPRAAVIAAVGAVAKAYASLLNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTM 83

Query: 320 DDPGLWGXXXXXXXXRESRMRWSLAAHDICLTNTLHSCFFALGKCVPVVRGAGVY 484
           DDP +WG         + + RW L A DIC  N   S  F LGKCVP+ RGAG+Y
Sbjct: 84  DDPLMWGFKGFPTTDAKLQ-RWVLTAEDICFRNVFMSYIFRLGKCVPITRGAGIY 137


>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
 Frame = +2

Query: 167 SLTVAVVGLFSKIIIEFLNKTTVYNKETLRRAVL-RPPGVPLLTISNHHSCFDDPGLWGX 343
           +L V ++G    I +  LN   +Y  E L++A+  RP G PLLT+SNH +  DDP +   
Sbjct: 114 ALAVPLIGNACHIFMHGLNSVQIYGAEKLQQALQERPKGKPLLTVSNHVAAMDDPFVIAS 173

Query: 344 XXXXXXXRES-RMRWSLAAHDICLTNTLHSCFFALGKCVPVVRGAGVY 484
                   E+ ++RW+L A D C TN + S FF   K +PV RG G+Y
Sbjct: 174 ILPPSVMLEAQKLRWTLCASDRCFTNPILSTFFRSVKVLPVSRGDGIY 221


>06_03_1136 -
           27897822-27898235,27898344-27898488,27899127-27899204,
           27899302-27899400,27900508-27900613,27901323-27901428
          Length = 315

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 303 LEMVR-SGTPGGRSTARRSVSLL 238
           LE++R  G PG  STARRSV LL
Sbjct: 124 LEILRCGGCPGSESTARRSVYLL 146


>11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997
          Length = 512

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 116 WIIPRL-RNPGRLWYCASSLTVAVVGLFSKIIIEFLNKTTVYNKETLRRAVLRPPGVPLL 292
           WI+  L RNP R+   A      V+G   K+  E L   +  +        L PPG+PLL
Sbjct: 320 WIMAELIRNP-RVMQKAQDEVRQVLGKHHKVTEEALRNLSYLHLVIKEGLRLHPPGLPLL 378


>01_01_0248 + 2041015-2041762,2042112-2042149
          Length = 261

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 312 EWWLEMVRSGTPGGRSTARRSVSLLYTVV 226
           EW++ + R   PGG   A  +V  LY+VV
Sbjct: 155 EWFMSLNRMYDPGGPKRAVDTVGCLYSVV 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,308
Number of Sequences: 37544
Number of extensions: 235433
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)