Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0425
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    87   5e-18
AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF016663-1|AAC70877.1|  154|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    27   7.2  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    27   9.5  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    27   9.5  

>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = +2

Query: 221 NKTTVYNKETLRRAVLRPPGVPLLTISNHHSCFDDPGLWGXXXXXXXXR-ESRMRWSLAA 397
           NK   +NKET  + +L  P  PL+T+SNH S  DDP +W         R + R R++LAA
Sbjct: 17  NKLICHNKETFVK-ILENPNQPLITVSNHRSNIDDPLMWCILKFREFWRYKDRNRYTLAA 75

Query: 398 HDICLTNTLHSCFFALGKCVPVVRGAGVY 484
           H+IC T   H+  F+LG+CVP VRG GVY
Sbjct: 76  HNICFTKQFHTTMFSLGRCVPCVRGEGVY 104


>AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical
           protein C46E1.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = -3

Query: 226 FI*EFYYNFAKKSHDGDCERARTIPQPP-RVSQPRDNPTDVVAHDEXXXXXHRDTTLT 56
           FI E         H G     R+ P PP  +  P D P D + H E        + LT
Sbjct: 62  FIEETPILLGSSEHSGSSSPPRSSPPPPPSIPPPSDPPKDGIFHHEDTRKIFGSSVLT 119


>AF016663-1|AAC70877.1|  154|Caenorhabditis elegans Hypothetical
           protein F21E9.2 protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 69  SLCYYKCNSS*ATTSVGLSLGCETRGGCGI--VRARSQSPSW 188
           ++C+Y+ N++         LGC + G C I  + ARS S  W
Sbjct: 54  TICFYRYNTADTAIPYLCELGCCSHGCCTISDLAARSTSFGW 95


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 228 VLFKNSIIILLKSPTTATVSELAQYHSRPGFRSRGII 118
           V+ +N+++I++    +   ++LAQY    GF   G+I
Sbjct: 453 VIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLI 489


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 228 VLFKNSIIILLKSPTTATVSELAQYHSRPGFRSRGII 118
           V+ +N+++I++    +   ++LAQY    GF   G+I
Sbjct: 453 VIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLI 489


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 374 RMRWSLAAHDICLTNTLHSCF 436
           R+ W    H IC+ N L+ CF
Sbjct: 280 RLGWDREDHRICIPNPLYHCF 300


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 110 IGWIIPRLRNPGRLWYCASSLTVAVVGLFSKIIIEFLNKTTVYNKETL 253
           + W  P+   P   W+C+ S  ++  G        FLN+T   N E L
Sbjct: 709 VDWHWPKPNKPAFFWHCSGSEELSASG------TSFLNRTEAANVEKL 750


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 110 IGWIIPRLRNPGRLWYCASSLTVAVVGLFSKIIIEFLNKTTVYNKETL 253
           + W  P+   P   W+C+ S  ++  G        FLN+T   N E L
Sbjct: 709 VDWHWPKPNKPAFFWHCSGSEELSASG------TSFLNRTEAANVEKL 750


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,493
Number of Sequences: 27780
Number of extensions: 193932
Number of successful extensions: 465
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)