Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0423
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    35   0.054
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +1

Query: 4   SDK*KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 183
           S+K KN   +  FN   N G + +     P     T++ ++   PP+TGR+ + P+  + 
Sbjct: 286 SNKYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAP 343

Query: 184 FSHGQGDEPKATNGTSVATN 243
           F   Q      TNG S   N
Sbjct: 344 F---QNAPAPFTNGPSDDVN 360


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical protein
            C34E10.8 protein.
          Length = 1024

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 130  PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 258
            P P     RA   +A    SH + + P A+  +S A+  Q  P
Sbjct: 925  PTPSGRTPRAAAIAANQAISHSKPNVPSASTSSSAASTDQENP 967


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 505 EAKFFLRYAYGCP 543
           E K F RYAYGCP
Sbjct: 393 EVKTFTRYAYGCP 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,722,294
Number of Sequences: 27780
Number of extensions: 238203
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)