Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0419
(317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 46 1e-06
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 40 7e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 35 0.003
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 30 0.074
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 28 0.30
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 27 0.69
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 1.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 1.2
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 25 2.1
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 25 2.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 2.8
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 3.7
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 3.7
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 25 3.7
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 4.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 6.4
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 24 6.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 23 8.5
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 23 8.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 46.0 bits (104), Expect = 1e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1
Query: 217 FAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
F DF+ GG+SA VSKTA PIERVKLL+Q Q
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQ 58
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 40.3 bits (90), Expect = 7e-05
Identities = 16/28 (57%), Positives = 25/28 (89%)
Frame = +1
Query: 232 LAGGISAXVSKTAVXPIERVKLLLQVQH 315
L+GG++A VS+TAV P+ER+K++ QVQ+
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN 52
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 34.7 bits (76), Expect = 0.003
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 223 KDFLAGGISAXVSKTAVXPIERVKLLLQVQH 315
K +AGG + V+K+ V P++RVK+L Q H
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNH 49
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 30.3 bits (65), Expect = 0.074
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 208 PVAFAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
PV + +++G IS + V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143
Score = 26.6 bits (56), Expect = 0.91
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 214 AFAKDFLAGGISAXVSKTAV-XPIERVKLLLQVQ 312
+F KDFLA G+S V++ V P + VK+ LQ Q
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 0.30
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 166 VKIT*SNKMSNLADPVAFAKDFLAGGISAXVSKTAVXPIERVKLLLQ 306
V +T +N SN P + F+AGG++ + A P++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 27.1 bits (57), Expect = 0.69
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 3 AIERDRSNFKKAHTYPLCSRDYEIT---PNL 86
+I + +FKK +YP+ + D+EIT PNL
Sbjct: 407 SIYHRKEDFKKQPSYPVLTSDFEITDAGPNL 437
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 1.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 232 LAGGISAXVSKTAVXPIERVKLLLQV 309
LAGGIS+ + + + P + +K+ +Q+
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQI 46
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 1.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 66 YEITPNLLFKNQELVFRDPPSACAATPTSTY 158
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 2.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 232 LAGGISAXVSKTAVXPIERVKLLLQVQ 312
++GG+S ++ + P++ VK LLQ +
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTR 235
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 229 FLAGGISAXVSKTAVXPIERVKLLLQVQ 312
FL+GG++A + T P E +K Q+Q
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQ 54
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +3
Query: 15 DRSNFKKAHTYPLCSRDYEITPNLLFKNQELVFRDPPSACAATPTSTY 158
D N K + + E TP +NQ L F P A PT+ +
Sbjct: 148 DHGNLKLDASPSFLKKPAEYTPLANRQNQNLAFDSPTEALPPKPTTPW 195
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 78 PNLLFKNQELVFRDPPSACAATPT 149
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 46 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 168
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 229 FLAGGISAXVSKTAVXPIERVKLLLQ 306
+LAGG++ V++ + P++ +K +Q
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQ 257
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 4.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 215
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 120 PPSACAATPTSTYSPSED 173
PPSA + P+S+ SPS D
Sbjct: 374 PPSATSFQPSSSRSPSVD 391
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 123 PSACAATPTSTYSPSEDHIIEQNVEPRRSG 212
P A++P YSPS Q P RSG
Sbjct: 126 PDYYASSPYGGYSPSGASSARQTPAPSRSG 155
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 114 RDPPSACAATPTSTYSPSEDHIIEQNV-EPRRS 209
R PP + +TP T S S + +E N P+++
Sbjct: 416 RSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKN 448
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 20 IEFQKSTHLPSVLP*LRNYSKSPVQKSGV 106
++F K + LP +RN +K+PVQ GV
Sbjct: 775 VQFYKQLASVNGLP-IRNENKAPVQMRGV 802
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,669
Number of Sequences: 5004
Number of extensions: 23038
Number of successful extensions: 77
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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