Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0419
(317 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 40 3e-04
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.022
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 31 0.15
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.20
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 30 0.35
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 29 0.82
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 2.5
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 27 2.5
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 2.5
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 3.3
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 27 4.4
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94) 27 4.4
SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26) 27 4.4
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 26 5.8
SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18) 26 5.8
SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20) 26 7.6
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 43.6 bits (98), Expect = 4e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1
Query: 223 KDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
K LAGGI+ VS+T+V P+ERVK+LLQ+Q
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ 65
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 190 MSNLADPVAFAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
MS + F ++F G +A +SKTA PIERVKLL+Q Q
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQ 41
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1
Query: 217 FAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
F ++F G +A +SKTA PIERVKLL+Q Q
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQ 40
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 238 GGISAXVSKTAVXPIERVKLLLQVQ 312
GG A VS+TA P++R+K+LLQVQ
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ 167
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 251 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 117
A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 211 VAFAKDFLAGGISAXVSKTAVXPIERVKLLLQV 309
+ + + FL GG SA ++++ P+E VK+L QV
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV 88
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 251 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 117
A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 205 DPVAFAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
DP K F + GI+A +++ A PI+ K+ LQ+Q
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQ 45
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 29.1 bits (62), Expect = 0.82
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 241 GISAXVSKTAVXPIERVKLLLQVQH 315
G+S +KT P+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 187 KMSNLADPVAFAKDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
K+ N P + G +S +SK + P + +K +QVQ
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQ 60
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 182
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 235 AGGISAXVSKTAVXPIERVKLLLQ 306
AGG++ S+T P+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 51 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 173
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +3
Query: 33 KAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 167
++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 109 ESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 37 HTPTLCAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT 177
H C PV+ L K + ++ H RV PPR +H++ +T
Sbjct: 256 HVNACCNPVVYSLHNPKLRKCMN--RLVHHKRVRTSPPRAVHVLAMT 300
>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
Length = 969
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 115 VIPHPRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAGGISAXVSKT 267
V+PHP PQ P L ++ ++K+ PVA A + +A +T
Sbjct: 442 VVPHPSAPQQSP----LTGLSWADKVKGTPSPVASACKIVPSNTTAFTHRT 488
>SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)
Length = 420
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 18 RSNFKKAHTYPLCSRDYEITPNLLFKNQELVFRDPPSACAATPTSTYSPS 167
RSN ++ L S D ++ P++LF+ E+ R P C AT +T P+
Sbjct: 45 RSNISQSEDLDLRSTDGKMAPHILFR--EIWSRKP--LCEATVITTTRPT 90
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 223 KDFLAGGISAXVSKTAVXPIERVKLLLQVQ 312
+ FLAGG ++ V +T P++ + L +Q
Sbjct: 107 RGFLAGGCASIVGQTITVPVDIISQKLMIQ 136
>SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)
Length = 211
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 96 NQELVFRDPPSACAATPTSTYSPSE 170
N+E +DPP AC P S+ SPSE
Sbjct: 67 NREPASQDPP-ACHDPPASSSSPSE 90
>SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20)
Length = 723
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 15 DRSNFKKAHTYPLCSRDYEITPNL-----LFKNQELVFRDPPSACAATPTSTYSPSEDHI 179
D S ++AH YP+ + E + L F+ Q + FRD C TS ++D +
Sbjct: 638 DNSQIRRAHEYPIRKQQIEASARLRTGFVTFQIQFVPFRDYLDKCYGDITSGARLAKDVL 697
Query: 180 IE 185
E
Sbjct: 698 EE 699
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,580,257
Number of Sequences: 59808
Number of extensions: 188444
Number of successful extensions: 426
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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