Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0416
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 2.0
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 2.7
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 25 3.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 3.6
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 3.6
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 24 4.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 24 4.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 24 6.3
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 23 8.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 23 8.3
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 23 8.3
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 2.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 74 QFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 220
+ +GIK +G ++ +I+ +DQA YF S E E + E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 106 SCVYGHIPGRSGTRTEKIF*EPWRRDFRR 192
S VYG +PG + E++ E W FR+
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQ 664
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 3.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 146 ELRRYFKSLG-AEISEEKSPKG-----IEDDLHKIVGVCDACXKEPSESDIEAILNS 298
EL Y L +IS +K+P+ +E+DL +++ + + +E E+D NS
Sbjct: 4 ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 159 ILRALAPRFQKKNHLRALRMICIR 230
ILR LAP F +KN L+ L + R
Sbjct: 97 ILRLLAPFFTEKNALKVLEWLIRR 120
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 3.6
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 122 ISLEDQALELRRYFKSLGAEISEEKSPKGI--EDDLHKIVGVCDACXKEPSESDIEAIL 292
I+L D + G ++ G+ + DLH I+G C E + SD+ A L
Sbjct: 230 ITLSDGTKRPCKIMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 24.2 bits (50), Expect = 4.7
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -3
Query: 129 RDMSINTAGPCILIPFSNCI 70
+++SI+ C+L+ F+NC+
Sbjct: 559 KELSISLFQACVLLQFNNCL 578
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 24.2 bits (50), Expect = 4.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 99 KGQLCLWTYPWKIR 140
+G +CLWTY +K R
Sbjct: 153 QGLICLWTYSFKQR 166
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 167 SLGAEISEEKSPKGIEDDLHKIVGVCDACXKEPSESDIEAILN 295
S IS ++ K +DD K+ + KE +E++ EA+ +
Sbjct: 376 SPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 188 EEKSPKGIEDDLHKIVGVCDACXKEPSESDIEAILNSIVS 307
++ SPK I++ LH + GV E S E+++N + S
Sbjct: 478 QQSSPKKIDEQLHDLQGVDLVNGFEGISSWRESMVNKLRS 517
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 59 INKRIQFEKGIKMQGPAVFMDISLEDQALEL 151
+N F+ G+ + GP ++ LED+ E+
Sbjct: 586 LNLENSFDFGMPLMGPYTQQNLQLEDEISEI 616
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 8.3
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -2
Query: 268 TRLFXTSITNPNDLMQIILNALRXXXX*NLGAKALKISSQFECLIFQGYVHKHSWPLHFN 89
T L S + N+ Q I L + LK Q CL + KH F
Sbjct: 124 TLLSICSKKSRNEATQAITTLKDLFIGGLLPDRKLKYMKQQSCLGSKNVTDKHLMVWAFE 183
Query: 88 SFFELYSFIY 59
SF + + F Y
Sbjct: 184 SFLKSFYFKY 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,058
Number of Sequences: 5004
Number of extensions: 19777
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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