Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0416
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 30 0.44
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 4.1
11_03_0142 + 10675764-10675991,10676533-10676943 26 5.4
11_01_0768 - 6442332-6443792 26 5.4
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649... 26 5.4
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 26 7.1
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 26 7.1
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 26 7.1
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 25 9.4
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 47 CL*IINKRIQFEK-GI-KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 217
C I++ RI ++ GI K+QG + +D+SL+ L K G E EE K +ED
Sbjct: 431 CGEIVDLRIMKDQNGISKLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKALED 489
>07_03_1479 -
26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 149 LRRYFKSLGAEISEEKSPKGIEDDLHKIVGV 241
LR YF++ A +S +P+G E+ HK+ V
Sbjct: 49 LRCYFRAFSAILSNFTAPQGTENAEHKLRNV 79
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 117 INTAGPCILIPFSNCILLFIIYKH*SECEN 28
+ + GP + +P NC LL ++ K C N
Sbjct: 147 VGSLGPMVAVPCVNCHLLVMLCKSSPACPN 176
>11_01_0768 - 6442332-6443792
Length = 486
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 153 EDILRALAPRFQKKNHLRALRMICIRSLGF 242
+ +++ L P F + + L +CI S+GF
Sbjct: 79 QQLVKVLPPEFAETKDAKGLAKLCISSVGF 108
>10_08_1034 +
22461397-22461702,22462311-22462524,22464936-22464997,
22465035-22465381,22465495-22465591
Length = 341
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 278 YPIHSALX-NKHHKPQRSYADHPQ 210
Y +H+A + HH P+ Y HP+
Sbjct: 36 YTVHAATYPHHHHHPEEEYQQHPR 59
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 277 IRFTRLFXTSITNPNDLMQIILNALRXXXX*NLGAKALKISSQFECLIFQGYVHKHSWPL 98
+ F R NPND+M ++L + +L ++ ++ + + L VH S L
Sbjct: 325 LNFLRKSLNKHENPNDIMALLLASKICSEERHLASEGVEYARRAIKLSESSDVHLKSVGL 384
Query: 97 HF 92
HF
Sbjct: 385 HF 386
>08_02_0501 +
17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 119 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKI 232
D+++E + + + LGA E++ KG+ + +HK+
Sbjct: 686 DVAVEKASENIEKDLVLLGATAVEDRLQKGVPECIHKL 723
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 248 HHKPQRSYADHPQCP 204
HH+P +SY HP P
Sbjct: 185 HHRPTKSYTGHPPPP 199
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 80 EKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDAC 253
E G G V DI E ++ LR + + K P+G+ + K + VC C
Sbjct: 612 ESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDC 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,212,475
Number of Sequences: 37544
Number of extensions: 117691
Number of successful extensions: 298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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