Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0416
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    29   0.70 
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   1.6  
Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      26   5.0  
AL033510-10|CAA22063.2|  274|Caenorhabditis elegans Hypothetical...    26   5.0  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    26   5.0  
AF016657-4|AAB93651.2|  296|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    26   6.6  
AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical...    26   6.6  
AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 119  DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACXK 259
            DI L  +A +LR Y KSL   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 140  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 232
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 140  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 232
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 140  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 232
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical
           protein E01G6.2 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 62  NKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 181
           NK+ +  K  K  G ++ MD+ LED+A  L    ++ G E
Sbjct: 62  NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 122  ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACXKEPSESDIEAILNSI 301
            +SLEDQ LEL    + +  E+ +EK+ K   D   K+    +    +  E D EA   S 
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313

Query: 302  VSI 310
            V +
Sbjct: 1314 VVV 1316


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 217
           K+  P+  +   L+D A   +R  + +   +S EK  KG++D
Sbjct: 185 KVLVPSTNVVAQLQDDATNKKRLIEDINYRVSWEKHQKGLKD 226


>AL033510-10|CAA22063.2|  274|Caenorhabditis elegans Hypothetical
           protein Y40H7A.3 protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 117 INTAGPCILIPFSNCILLFIIYKH 46
           +NT   C L+ F  C+++  +YKH
Sbjct: 10  LNTHFFCALVFFCQCLVILYLYKH 33


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 217
           K+  P+  +   L+D A   +R  + +   +S EK  KG++D
Sbjct: 185 KVLVPSTNVVAQLQDDATNKKRLIEDINYRVSWEKHQKGLKD 226


>AF016657-4|AAB93651.2|  296|Caenorhabditis elegans Hypothetical
           protein C16C4.5 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 GRSGTRTEKIF*EPWRRDFRRK 195
           G+  T+TEK F  PWR + +R+
Sbjct: 158 GKYSTKTEKRFNIPWRLEIKRQ 179


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 288 MASISDSLGSXKQASQTPTILCRS 217
           M  ++ SLGS  Q  +T  ILCR+
Sbjct: 533 MKPVAGSLGSDSQRKETGRILCRA 556


>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 102 PCILIPFSNCILLFIIYKH*SEC 34
           PCIL+P   C+L+  + K   +C
Sbjct: 233 PCILLPIVTCLLVMDLLKTRKKC 255


>AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical
           protein Y116A8C.9 protein.
          Length = 422

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 230 IVGVCDACXKEPSESDI 280
           IVG+C  C K PS ++I
Sbjct: 62  IVGICSFCSKPPSRNEI 78


>AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical
           protein Y54G2A.42 protein.
          Length = 488

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 145 ECLIFQGYVHKHSWPLHFNSFFEL 74
           E  I+ G V KH W L  ++ +EL
Sbjct: 207 ETWIYHGMVRKHGWDLKNHTAYEL 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,505,808
Number of Sequences: 27780
Number of extensions: 110960
Number of successful extensions: 404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)