Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0416
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    30   0.37 
At5g51050.1 68418.m06328 mitochondrial substrate carrier family ...    27   2.6  
At3g59270.1 68416.m06607 syntaxin-related family protein contain...    27   3.5  
At3g50770.1 68416.m05560 calmodulin-related protein, putative si...    27   3.5  
At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutamate--...    27   3.5  
At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutamate--...    27   3.5  
At2g22590.1 68415.m02678 glycosyltransferase family protein cont...    26   4.6  
At4g14103.1 68417.m02177 F-box family protein contains F-box dom...    26   6.1  
At3g07700.2 68416.m00926 ABC1 family protein contains Pfam domai...    26   6.1  
At3g07700.1 68416.m00925 ABC1 family protein contains Pfam domai...    26   6.1  
At1g77950.1 68414.m09084 MADS-box family protein similar to MADS...    26   6.1  
At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    25   8.1  
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER...    25   8.1  
At1g69190.1 68414.m07919 dihydropterin pyrophosphokinase, putati...    25   8.1  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 96  CKGQLCLW--TYPWKIRHSN*EDIL 164
           C   LCLW  + P KIRHSN E IL
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHIL 543


>At5g51050.1 68418.m06328 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 487

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 128 LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHK 229
           ++D+ LEL R F+++  E +   SP+G+ D L K
Sbjct: 101 MDDKELELYRIFQAIDVEHNGCISPEGLWDSLVK 134


>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 235 NDLMQIILNALRXXXX*NLGAKALKISSQFECLIFQGYVHKH 110
           N+L+Q+ +   R     +L A  LK S   E L+F+G +H++
Sbjct: 185 NNLIQLTVKTDRLVGWESLTA-LLKNSPNLETLVFEGLLHRY 225


>At3g50770.1 68416.m05560 calmodulin-related protein, putative
           similar to regulator of gene silencing
           calmodulin-related protein GI:12963415 from [Nicotiana
           tabacum]
          Length = 205

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 140 ALELRRYFKSLGAEISEEKSPKGIED 217
           A ELR YF S+G  IS E + + I +
Sbjct: 82  AFELRHYFGSVGEYISHEAAQEAINE 107


>At3g03780.2 68416.m00387
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase, putative / vitamin-B12-independent
           methionine synthase, putative / cobalamin-independent
           methionine synthase, putative very strong similarity to
           SP|O50008
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
           methionine synthase isozyme) (Cobalamin-independent
           methionine synthase isozyme) {Arabidopsis thaliana};
           contains Pfam profile PF01717: Methionine synthase,
           vitamin-B12 independent
          Length = 765

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 137 QALELRRYFKSLGAE-ISEEKSPKGIEDDLHKIVGV 241
           Q +ELRR  +   A+ ISEE   K I++++ K+V +
Sbjct: 442 QTVELRRVRREYKAKKISEEDYVKAIKEEIKKVVDI 477


>At3g03780.1 68416.m00386
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase, putative / vitamin-B12-independent
           methionine synthase, putative / cobalamin-independent
           methionine synthase, putative very strong similarity to
           SP|O50008
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
           methionine synthase isozyme) (Cobalamin-independent
           methionine synthase isozyme) {Arabidopsis thaliana};
           contains Pfam profile PF01717: Methionine synthase,
           vitamin-B12 independent
          Length = 765

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 137 QALELRRYFKSLGAE-ISEEKSPKGIEDDLHKIVGV 241
           Q +ELRR  +   A+ ISEE   K I++++ K+V +
Sbjct: 442 QTVELRRVRREYKAKKISEEDYVKAIKEEIKKVVDI 477


>At2g22590.1 68415.m02678 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 470

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDAC 253
           + S+  +  E R  FK   AE +E   P     D+H++ GV D C
Sbjct: 182 ETSVAFKLFECRFIFKGFMAETTEGNVP-----DIHRVGGVIDGC 221


>At4g14103.1 68417.m02177 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 166 LKISSQFECLIFQGYVHKHSW 104
           LK S   E LIFQG +HK ++
Sbjct: 343 LKNSPNLETLIFQGLIHKATY 363


>At3g07700.2 68416.m00926 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 695

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 128 LEDQALELRRYFKSLGAEISEEKS---PKGIEDDLHKIVGVCDACXKEPSESDIEAILNS 298
           L +  L+L   F  LG ++S  +S   P+   D+L K+     A   E ++  IEA L +
Sbjct: 193 LRESVLQLGPTFIKLG-QLSSTRSDLFPREFVDELSKLQDRVPAFSPEKAKRFIEAELGA 251

Query: 299 IVSIM 313
            +S+M
Sbjct: 252 PISVM 256


>At3g07700.1 68416.m00925 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 695

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 128 LEDQALELRRYFKSLGAEISEEKS---PKGIEDDLHKIVGVCDACXKEPSESDIEAILNS 298
           L +  L+L   F  LG ++S  +S   P+   D+L K+     A   E ++  IEA L +
Sbjct: 193 LRESVLQLGPTFIKLG-QLSSTRSDLFPREFVDELSKLQDRVPAFSPEKAKRFIEAELGA 251

Query: 299 IVSIM 313
            +S+M
Sbjct: 252 PISVM 256


>At1g77950.1 68414.m09084 MADS-box family protein similar to MADS
           box transcription factor GI:1905943 from [Sorghum
           bicolor]
          Length = 124

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 143 LELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCD 247
           LEL+R  KS   +I+  K  KG+    +++  +CD
Sbjct: 6   LELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCD 40


>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 166 LKISSQFECLIFQGYVHK 113
           LK S   E LIFQG +HK
Sbjct: 336 LKNSPNLETLIFQGLIHK 353


>At4g02970.1 68417.m00404 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 270

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 101 GPAVFMDISLEDQALELRRYF-KSLGAEISEE---KSPKGIEDDLHKI 232
           G +  + I   +  LE++    KS G  +S++      K +EDDLHKI
Sbjct: 10  GSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKI 57


>At1g69190.1 68414.m07919 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 459

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 92  KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCD 247
           +M+G  + +D    + ALE  R     GA+I  + S   +++++HK+V   D
Sbjct: 252 EMKGKLISVDTFNSEVALEAIRN----GADILNDVSGGSLDENMHKVVADSD 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,083,269
Number of Sequences: 28952
Number of extensions: 102579
Number of successful extensions: 310
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)