Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0410
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   1.9  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   4.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 286 HTSANHAWLASKSMGQARNNLGPTVTSLEECASRNAFNVDQTPGSHSNTV 137
           H S  H W +     ++    GP +  + E  + +A   D    SH  T+
Sbjct: 170 HNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSSHVITI 219


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 370 STAACLLRPYNATPSR 323
           +T   LL+PY+ATP+R
Sbjct: 8   ATIITLLQPYDATPAR 23


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 724 TYLALNDYILNKCSYCLVRIKKSSYL*SIESYNSF 620
           +++ALND     C  C +  +K SY+      N+F
Sbjct: 263 SWIALNDDYNRLCHLCFLLDEKLSYIILTSFLNNF 297


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  QIIWNRSKDFWLGTCVGNYSRWSCD 111
           +++ +R +   +    GNYSR +C+
Sbjct: 36  KVLGHRQRAMEISLTTGNYSRLACE 60


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 531 QEAANYSGNQSQDSDNASMDSN 596
           Q+ +NYS N   D    + D N
Sbjct: 84  QQNSNYSSNSKPDCSKGNADQN 105


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  QIIWNRSKDFWLGTCVGNYSRWSCD 111
           +++ +R +   +    GNYSR +C+
Sbjct: 218 KVLGHRRRAVEISLTTGNYSRLACE 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,419
Number of Sequences: 336
Number of extensions: 3909
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)