Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0410
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.68
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.89
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 28 1.2
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 27 3.6
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.6
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.8
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 26 4.8
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 8.3
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 25 8.3
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 423 HTLRPITVDDVGGEESSQDATANNNQDPLLNMLMRLQEAAN-YSGNQSQDSDNASMDSNL 599
H + PI+ D++ + S+ + +N+Q+P ++ + +A S DNAS D+ L
Sbjct: 352 HKIEPISADELVESDDSRTSALSNSQNPSDDVENQSDQALEVLSLTNPPKIDNASADTTL 411
Query: 600 THDSSMGNEL 629
+++ ++L
Sbjct: 412 HKETNKIDKL 421
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 259 ASKSMGQARNNLGPTVTSLEECASRNAFNVDQTPGSHSNTVAKAGSL 119
+S S+G + L P++T + C + A PGS +NT SL
Sbjct: 415 SSTSLGHLESKLAPSITFPDACDALEAEECITRPGSATNTPQSDRSL 461
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 492 NNQDPLLNMLMRLQEAANYSGNQSQDSDNASMDSNLTHDSS 614
N + LL + EA++YS NQS DSD+ ++ SS
Sbjct: 137 NKPNDLLKAEIEDNEASHYSQNQSSDSDSDEAPEEVSLKSS 177
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 554 EPKPRL*QRQHGLESHSRQLYGKRVIRFYASQIRRFL 664
+P R +R+HG S R + G+RV+R + R +L
Sbjct: 70 QPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYL 106
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +3
Query: 441 TVDDVGGEESSQDATANN-----NQDPLLNMLMRLQEAANYSGNQSQDSDNASMDSNL 599
T + V ++SQ +T NN NQ P N L LQ A +S + S +++S L
Sbjct: 232 TNNRVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSSTLNLNSEL 289
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 417 HSHTLRPITVDDVGGEESSQDATANNNQDPLLNMLMRLQEAANYSGNQSQ 566
H + LR + V + Q +T P+LNM RLQ A Y GN+++
Sbjct: 915 HDYLLRELEVSVASLSSNDQPSTGLY---PILNMFSRLQYAQPY-GNENE 960
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 357 HAAVDPLQHIKASYPWREPNHSHTLRPITVDDVGGEESSQDAT--ANNNQDPLLNM 518
HA++DP + + E H+ ++ +++ + +ES T ++ +D LLN+
Sbjct: 14 HASIDPPSYSPQKSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDRKDALLNI 69
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 26.2 bits (55), Expect = 4.8
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Frame = +3
Query: 255 EASQAWFADVWNYSIVPYASEA-VREGVALYGRRRHAAVDPLQHIKASYPWREPNHSHTL 431
+A+ +W + N + + A + E AL ++ + + KA++ + H
Sbjct: 166 QANDSWISKKRNAPLSSISQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA- 224
Query: 432 RPITVDDVGGEESSQDATANNNQDPLLNMLMRLQEA------ANYSGNQSQDSDNASMDS 593
+ I+ D+ + + +A+ Q P LN L+ Q ++ S ++S S + S D
Sbjct: 225 KQISASDLSLHQ--EFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDL 282
Query: 594 NLTHDSSMGNEL*DS 638
+ T DSS G+E D+
Sbjct: 283 SSTSDSSSGDESSDT 297
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 595 ISLTTALWETSYKILCFTNKK 657
ISL T LWET Y +L N++
Sbjct: 17 ISLETVLWETHYVLLNLHNEQ 37
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +3
Query: 462 EESSQDATANNNQDPLLNMLMRL-QEAANYSGNQSQDSDNASMDSNLTHDSSMGNEL*DS 638
E ++ T N + N + QE SG S + D L+HD GN L
Sbjct: 526 ENKNEPKTGENKEPSQTNEYVNCKQENKELSGQLSGNLDIKKEAGKLSHDGEQGNLLKPL 585
Query: 639 MLH 647
+ H
Sbjct: 586 VFH 588
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 593 ESHSRQLYGKRVIRFYASQIRRFL 664
++H + GKR++R+Y Q +R L
Sbjct: 234 KNHKKDQTGKRMLRYYVHQRQRML 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,641
Number of Sequences: 5004
Number of extensions: 60525
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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