Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0410
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120...    29   2.8  
08_02_0489 + 17723364-17723540,17723669-17723913,17724193-17724559     29   3.8  
01_06_1354 - 36599904-36600643,36600851-36601352                       28   6.6  
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    28   8.7  
04_03_0075 + 10726807-10727721,10728756-10729496                       28   8.7  
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958...    28   8.7  

>02_02_0529 -
           11208973-11211143,11211703-11211772,11211993-11212049,
           11212769-11212819,11213112-11213264,11216095-11216255,
           11216609-11216642
          Length = 898

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 336 ALYGRRRH--AAVDPLQHIKASYPWREPNHSHTLRPITV 446
           A Y    H   A+  L H  +SYP +EP +SHT  PI V
Sbjct: 230 AQYNPNEHILGAMPSLLHRTSSYPQQEPQYSHT-EPIPV 267


>08_02_0489 + 17723364-17723540,17723669-17723913,17724193-17724559
          Length = 262

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 473 TRLFATDIVYGDRSQCM*MVWFSPRIRCFYV 381
           +++F T++VYGDR+Q    V +   + CF V
Sbjct: 101 SKVFMTELVYGDRTQATATVKYISLLVCFLV 131


>01_06_1354 - 36599904-36600643,36600851-36601352
          Length = 413

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 307 TLRRQSERGSRCTVGGDTLRSIP 375
           TLRR+   G RCT GG   R+IP
Sbjct: 207 TLRRRHCTGGRCTQGGVMKRAIP 229


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
 Frame = +3

Query: 156 PGVWSTLNAFLEAHSSSDVTVGPRLFLACPMDLEASQAWFADVWNYSIVPYASEAVREGV 335
           P  W+  N      + +D TV PR        ++   + FA+  N++      +  R   
Sbjct: 488 PSTWTYRN---NVTNCADRTV-PRTAPQPNDHMDCRVSGFAEATNFNDQAGRHQGFRP-- 541

Query: 336 ALYGRRRHAAVDPLQHIKASYPWREPNHSHTLRPITVDDVGGEESSQDATANNNQDPLLN 515
           + +G   H     + H  A+    E N+S   R + ++      S   ATANN     LN
Sbjct: 542 SSFGTTNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALN 601

Query: 516 MLMR-LQEAANYSGNQSQDSDNASM 587
            + R       +SG+ S +   AS+
Sbjct: 602 DVNRSCITGKGFSGSFSNNDGAASI 626


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 246 MDLEASQAWFADVWNYSIVPYASEAVREGVALYGRRRH 359
           M +  S+ W+A++ NY +  Y      + +  Y  RRH
Sbjct: 368 MTVRDSKPWYANIVNYMVSKYIPPRENQRMLKYESRRH 405


>03_02_0844 +
           11695159-11695263,11695402-11695463,11695789-11695876,
           11695958-11696019,11696250-11696346,11696592-11696984,
           11697072-11697611,11697856-11697966,11698102-11698242,
           11698290-11698394,11698480-11698557,11699346-11699472,
           11699580-11699625,11699709-11699754
          Length = 666

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 387 LCVARDRPQRVSSDRTTRPPLGLPPKRTALCCNSTRPR 274
           +  A  R +   ++R  R  L LPP R  + CN   P+
Sbjct: 1   MAAAASRKEEERNERVVRGLLKLPPNRRCINCNGLGPQ 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,949
Number of Sequences: 37544
Number of extensions: 452319
Number of successful extensions: 1110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)