Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0410
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_316| Best HMM Match : No HMM Matches (HMM E-Value=.)                61   8e-10
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    30   2.2  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.9  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.8  
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_43751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +3

Query: 222 PRLFLACPMDLEASQAWFADVWNYSIVPYASEAVREGVALYGRRRHAAVDPLQHIKASYP 401
           P LF +CPMD  +++ WF +VWNY ++PY  + +R    +Y  R     DP + +   +P
Sbjct: 2   PSLFYSCPMDFHSAEGWFGNVWNYQVIPYLHQTIRNSSKIY-ERNIVWDDPTKWVIMRWP 60

Query: 402 WR 407
           W+
Sbjct: 61  WQ 62


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 84  RKLFSLELR--LGRREPAL-ATVLEWLPGVWSTLNAFLEAHSSSDVTV 218
           RK   LELR  L R    L A+++E +   W ++N F  AH+ SD  V
Sbjct: 467 RKRMHLELRDNLSRFGATLKASLIESVKNTWESINEFARAHAYSDGVV 514


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 506 WVLIVVSCRILTRLFATDIVYGDRS--QCM*MVWFSPRIRCFYVLQGIDRSVSP 351
           W L +V C  L  L+A  I  GD S  QC+   W +   + +Y +QG+   + P
Sbjct: 148 WALSLVLCSPL--LYAYRITSGDGSPLQCVNTAWGNKGRQIYYSIQGVSLFIVP 199


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 58   KDFWLGTC--VGNYSRWSCDSAEGSQLWLRC*NG 153
            +DF + TC   GNY R  C+ A G+Q W    NG
Sbjct: 3075 RDFPIPTCDKKGNYERVQCNYAWGTQCWCVDKNG 3108


>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 4   NYTTTSG--GSSLQIIWNRSKDFWLGTCVGNYSRWSC 108
           NY   SG  G   Q++W  S    +G   G Y+ W C
Sbjct: 296 NYGGMSGATGHFTQLVWKESTLLGIGNAPGQYTGWPC 332


>SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 134 GYGVRMAARSLVHIERIPRGTLLK*RHSGTQVVPS 238
           GY  R   R +  + RIPR   LK R  GT  + S
Sbjct: 181 GYDSRFLGREVDRVRRIPRDDTLKDRRKGTGALSS 215


>SB_43751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 89  FPTQVPSQKSFDRFHMICSEEPP 21
           F +++P ++S + FH++ S EPP
Sbjct: 132 FTSKIPVKRSCEYFHLVYSTEPP 154


>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 234 LACPMD--LEASQAWFADVWNYSIVPYASEAVREGVALYGRRRHAAVD 371
           L+ P D  +E  +AW+A  +N S + Y        +  Y R+R+A +D
Sbjct: 78  LSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKKNVRIDYYYRKRNARID 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,582,314
Number of Sequences: 59808
Number of extensions: 500530
Number of successful extensions: 1465
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)