Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0410
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 223 GPTVTSLEECASRNAFNVD 167
           G   TSLEE A+RNA   D
Sbjct: 33  GKRSTSLEELANRNAIQSD 51


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  QIIWNRSKDFWLGTCVGNYSRWSCD 111
           +++ +R +   +    GNYSR +C+
Sbjct: 189 KVLGHRQRAMEISLTTGNYSRLACE 213


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  QIIWNRSKDFWLGTCVGNYSRWSCD 111
           +++ +R +   +    GNYSR +C+
Sbjct: 128 KVLGHRQRAMEISLTTGNYSRLACE 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  QIIWNRSKDFWLGTCVGNYSRWSCD 111
           +++ +R +   +    GNYSR +C+
Sbjct: 189 RVLGHRQRHSTIHLSTGNYSRLACE 213


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 491 VSCRILTRLFATDIV 447
           + CR LT  F TD++
Sbjct: 172 IECRELTARFTTDVI 186


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 357  VSSDRTTRPPLGLPPKRTALCCNST 283
            V S RT     G+PP  T L  NST
Sbjct: 1489 VLSVRTQGQAPGIPPAATFLSPNST 1513


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 357  VSSDRTTRPPLGLPPKRTALCCNST 283
            V S RT     G+PP  T L  NST
Sbjct: 1485 VLSVRTQGQAPGIPPAATFLSPNST 1509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,725
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)