Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0408
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 62 3e-10
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 41 4e-04
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 7e-04
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 39 0.002
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.006
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 35 0.033
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.033
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.077
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.10
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 32 0.18
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.23
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 32 0.23
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 0.31
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 31 0.31
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.41
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 30 0.72
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 0.72
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 30 0.95
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 0.95
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 1.7
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 28 3.8
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 3.8
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 28 3.8
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 5.0
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 27 5.0
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 5.0
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 27 8.8
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 27 8.8
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 238 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 414
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 415 LLSFWR 432
LSFWR
Sbjct: 69 FLSFWR 74
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/70 (18%), Positives = 35/70 (50%)
Frame = +1
Query: 223 ADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIP 402
++ + F+K+ +GG + A+S V ++ + L + ++++ G++D + +
Sbjct: 108 SNAIKFSKNIASGGAAGAMSLFFVYSLDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTI 167
Query: 403 KEQGLLSFWR 432
GL+ +R
Sbjct: 168 ASDGLVGLYR 177
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +1
Query: 211 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 387
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 388 FVRIPKEQGLLSFWR 432
+R + +G+ SFWR
Sbjct: 61 TMRTYRAEGIGSFWR 75
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/63 (42%), Positives = 46/63 (73%)
Frame = +1
Query: 244 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 423
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILG 89
Query: 424 FWR 432
+++
Sbjct: 90 YFK 92
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1
Query: 259 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
GG A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WR
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWR 194
Score = 31.5 bits (68), Expect = 0.31
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
LAG ++ S+T++ P+E +K L ++ +Y+G++ A I +++G+ SF+R
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTG-------QYRGLLHAASVIYQKEGIRSFYR 287
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +1
Query: 232 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 411
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + K +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 412 GLLSFWR 432
G+ +FW+
Sbjct: 109 GIKAFWK 115
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I +E+G+L+ ++
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTILREEGILALYK 213
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 208 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGI 378
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 379 VDAFVRIPKEQGLLSFWR 432
D F I KE+G + ++
Sbjct: 79 KDCFRTILKEEGAMGLFK 96
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 253 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
L G S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++
Sbjct: 426 LVGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYK 482
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Frame = +1
Query: 226 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGI 378
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 379 VDAFVRIPKEQGLLSFWR 432
+ V + K +G+ + ++
Sbjct: 70 LGTMVTLFKTEGMKTMYK 87
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 34.7 bits (76), Expect = 0.033
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 265 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +R
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYR 975
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 34.7 bits (76), Expect = 0.033
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 214 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFV 393
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 394 RIPKEQGLLSFWR 432
+ KE+G++ F R
Sbjct: 180 QSYKEEGMIVFTR 192
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.5 bits (73), Expect = 0.077
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 295 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 417
AP ERVK LLQVQ K+ RY+G+ D +++ + GL
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGL 216
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.1 bits (72), Expect = 0.10
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +1
Query: 250 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 429
F++G + V+ + P++ V+ L VQ +S + ++ Y GIV A RI E+G+ +
Sbjct: 32 FVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLY 89
Query: 430 R 432
+
Sbjct: 90 K 90
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 250 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 429
F A IS + A P++ K +Q + I YKG +D RI + +G+ + W
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALW 153
Query: 430 R 432
+
Sbjct: 154 K 154
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 367 YKGIVDAFVRIPKEQGLLSFWR 432
Y + +A R+ KE+G+L+ WR
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWR 56
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.9 bits (69), Expect = 0.23
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 202 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIV 381
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 382 DAFVRIPKEQGLLSFWR 432
D RI +E G+ ++
Sbjct: 181 DCLRRIYREAGVRGVYK 197
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 262 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
G+S +KT AP+ER+K+L Q Q+ + + A I K++GL +++
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN------KHYKNMSVFGALKAIYKKEGLQGYYK 113
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.5 bits (68), Expect = 0.31
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1
Query: 256 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
AG ++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F++
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYK 266
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 31.5 bits (68), Expect = 0.31
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 272 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 138
A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 31.1 bits (67), Expect = 0.41
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +1
Query: 250 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 417
F+ GG++ AVS+T P++ V+ +Q ++ + +Y ++ V + K+ G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGI 228
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 272 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 138
A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 30.3 bits (65), Expect = 0.72
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 349 IAADQRYKGIVDAFVRIPKEQGLLSFWR 432
I ++Y G+++AF RI +++G+ +F+R
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYR 46
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 30.3 bits (65), Expect = 0.72
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 419
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 0.72
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 419
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 30.3 bits (65), Expect = 0.72
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 419
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.9 bits (64), Expect = 0.95
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 419
A+ S RQQ R RP GY +R R YP+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 0.95
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 256 AGGISAAVSKTAVAPIERVKLLLQ 327
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 419
A+ S RQQ R RP +GY +R R YP+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 379 VDAFVRIPKEQGLLSFWR 432
+DA ++IP+ +GL S WR
Sbjct: 64 IDALIKIPRYEGLSSLWR 81
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 280 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +R
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFR 328
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 45 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 188
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 250 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 426
F +GGI+ +S P++ VK Q + +Y G D +I G+ +F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAF 419
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 93 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 203
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 253 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 432
LAG + A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYR 53
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 72 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 194
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 58 HTPTLCAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT 198
H C PV+ L K + ++ H RV PPR +H++ +T
Sbjct: 256 HVNACCNPVVYSLHNPKLRKCMN--RLVHHKRVRTSPPRAVHVLAMT 300
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 244 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 333
+ FLAGG ++ V +T P++ + L +Q
Sbjct: 107 RGFLAGGCASIVGQTITVPVDIISQKLMIQ 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,652,588
Number of Sequences: 59808
Number of extensions: 268276
Number of successful extensions: 813
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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