Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0407
         (420 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CRP4 Cluster: Nuclear VCP like protein with 2 AAA ATp...    31   7.2  
UniRef50_Q6LFH4 Cluster: Citrate synthase-like protein, putative...    31   9.5  

>UniRef50_Q5CRP4 Cluster: Nuclear VCP like protein with 2 AAA ATpase
           domains; n=2; Cryptosporidium|Rep: Nuclear VCP like
           protein with 2 AAA ATpase domains - Cryptosporidium
           parvum Iowa II
          Length = 695

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 24  RVLLAS*TSKPTIHKPSKMKPHRL*RFVYKPLFN 125
           +V + + T++P I  P+ M+P RL R +Y PL N
Sbjct: 544 KVFVVAATNRPDIIDPAMMRPGRLDRIIYVPLPN 577


>UniRef50_Q6LFH4 Cluster: Citrate synthase-like protein, putative;
           n=1; Plasmodium falciparum 3D7|Rep: Citrate
           synthase-like protein, putative - Plasmodium falciparum
           (isolate 3D7)
          Length = 465

 Score = 31.1 bits (67), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 196 DDFKFYCLKYNIFIKNSVLK*FHSKSRNNKYKVT*IYLY 312
           +DF   CL +N +IK++ LK    K +N+K  +  IY Y
Sbjct: 197 NDFVSSCLLFNFYIKSNCLKEKIKKEKNDKIVMNNIYNY 235


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,654,431
Number of Sequences: 1657284
Number of extensions: 5065472
Number of successful extensions: 9317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9299
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)