Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0407
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.3  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    24   8.4  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 1   RRDTTTLRAFFSHHEPASQQYINLPK*SLIGYN 99
           RR TT+L +  +HH  +S   +  P  S   YN
Sbjct: 155 RRSTTSLLSSSAHHSRSSYYDLATPTRSSFSYN 187


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 343 NEFLLPFCCININIFTLLYIYYCAIWNEII 254
           N+  +P CC  I ++    +   A WN +I
Sbjct: 381 NDTPIPLCCAKILLYARRQLTRMARWNNLI 410


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 45  TSKPTIHKPSKMKPHRL*RFVYKPL 119
           T++P    P+ M+P RL + +Y PL
Sbjct: 642 TNRPDQIDPALMRPGRLDQLIYVPL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,832
Number of Sequences: 5004
Number of extensions: 23141
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)