Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0407
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    27   4.6  
07_01_0758 - 5833016-5833234,5833324-5833839,5833940-5833960,583...    27   6.1  
07_01_0764 + 5860571-5860780,5860865-5860996,5861082-5861252,586...    27   8.1  

>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 379 SHIMLFHIPSNVNEFLLPFCCININIFTLLY 287
           ++I ++ I +  NE +L F  +N N+  LLY
Sbjct: 216 NYIPIYEIEATRNETILEFAKLNFNLLQLLY 246


>07_01_0758 -
           5833016-5833234,5833324-5833839,5833940-5833960,
           5834062-5834232,5834318-5834449,5834534-5834743
          Length = 422

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 348 LEGIWNSIMCDPHYCNS 398
           +E +WN I+ D +YC+S
Sbjct: 327 MENVWNPIIIDQNYCDS 343


>07_01_0764 +
           5860571-5860780,5860865-5860996,5861082-5861252,
           5861345-5861365,5861457-5861972,5862008-5862301
          Length = 447

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 348 LEGIWNSIMCDPHYCNS 398
           +E +WN ++ D +YC+S
Sbjct: 327 MENVWNPVIIDQNYCDS 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,275,050
Number of Sequences: 37544
Number of extensions: 115680
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)