Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0407
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 294 NVNIFILIQQNGSK-NSFTLEGIWNSIMCDPHY 389
           ++ IF    +NGS   SF++E  WN +   PH+
Sbjct: 193 DIKIFKTEMKNGSNVESFSVEFYWNPLSHQPHF 225


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 376 HIMLFHIPSNVNEFLLPFCC 317
           H++++ +PSN N   L FCC
Sbjct: 404 HVIVYRMPSNENVQSLYFCC 423


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 376 HIMLFHIPSNVNEFLLPFCC 317
           H++++ +PSN N   L FCC
Sbjct: 404 HVIVYRMPSNENVQSLYFCC 423


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 355 PSNVNEFLLPFCCININIFTLLYIY 281
           P+NV  +LL  C I   I  LLY+Y
Sbjct: 342 PTNVVMWLLVVCIIMFMIIMLLYVY 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,721,595
Number of Sequences: 27780
Number of extensions: 122532
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)