Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0407
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16750.1 68415.m01921 protein kinase family protein contains ...    28   2.2  
At3g31370.1 68416.m03999 hypothetical protein contains similarit...    28   3.0  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    26   9.0  

>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 106 TKRYNR*GFILEGLCIVGLLVHDARRTRAMS 14
           TK+    G +L+G  ++G+LV +A+R  AMS
Sbjct: 74  TKKIELKGEVLKGNSVLGVLVKEAKRYNAMS 104


>At3g31370.1 68416.m03999 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 272

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 333 KNSFTLEGIWNSIMCDPHYCNSRYL 407
           K   TLE +W  +M D  +C+S  L
Sbjct: 125 KTKLTLEHVWREVMFDQKWCSSNAL 149


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1190

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
 Frame = -3

Query: 376  HIMLFHIPSNV--NEFLL 329
            H+ +FH+PSNV  NEF L
Sbjct: 1120 HMFIFHVPSNVDFNEFSL 1137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,033,531
Number of Sequences: 28952
Number of extensions: 105495
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)