Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0406
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 162 1e-40
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 146 8e-36
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 146 8e-36
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 126 2e-29
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 122 3e-28
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 121 3e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 102 2e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 102 2e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 102 2e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 95 4e-20
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 94 8e-20
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 86 2e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 78 4e-15
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 73 2e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 68 6e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 66 1e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 64 5e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 5e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 63 1e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 2e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 61 5e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 60 1e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 60 1e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 60 2e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 59 2e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 59 2e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 57 8e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 3e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 53 1e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 52 2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 52 4e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 4e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 52 4e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 51 7e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 2e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 2e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 2e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 48 7e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 48 7e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 48 7e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 1e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 47 1e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 3e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 4e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 4e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 45 5e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 44 8e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 44 1e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 42 3e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.001
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 40 0.001
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 38 0.004
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 36 0.029
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 35 0.038
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 34 0.067
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.12
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 33 0.21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.27
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.63
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.63
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.83
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 1.9
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 3.3
At2g33420.1 68415.m04096 expressed protein 28 4.4
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 5.8
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 5.8
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 7.7
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 7.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 7.7
At2g25460.1 68415.m03049 expressed protein 27 7.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 7.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 7.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 7.7
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 162 bits (394), Expect = 1e-40
Identities = 73/135 (54%), Positives = 96/135 (71%)
Frame = +3
Query: 222 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 401
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 402 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 581
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 582 QPPIRRGDGPIALVL 626
QP + GDGPI LVL
Sbjct: 164 QPMLAHGDGPIVLVL 178
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 146 bits (355), Expect = 8e-36
Identities = 61/124 (49%), Positives = 91/124 (73%)
Frame = +3
Query: 255 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 434
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 435 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 615 ALVL 626
L+L
Sbjct: 241 VLIL 244
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 146 bits (355), Expect = 8e-36
Identities = 61/124 (49%), Positives = 91/124 (73%)
Frame = +3
Query: 255 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 434
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 435 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 615 ALVL 626
L+L
Sbjct: 241 VLIL 244
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 126 bits (303), Expect = 2e-29
Identities = 51/128 (39%), Positives = 83/128 (64%)
Frame = +3
Query: 240 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 419
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 599
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 600 GDGPIALV 623
+GPI ++
Sbjct: 299 DEGPIGVI 306
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 122 bits (293), Expect = 3e-28
Identities = 54/129 (41%), Positives = 79/129 (61%)
Frame = +3
Query: 240 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 419
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 599
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 600 GDGPIALVL 626
GDGPI LV+
Sbjct: 467 GDGPIGLVM 475
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 121 bits (292), Expect = 3e-28
Identities = 53/129 (41%), Positives = 79/129 (61%)
Frame = +3
Query: 240 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 419
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 599
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 600 GDGPIALVL 626
GDGPI LV+
Sbjct: 600 GDGPIGLVM 608
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 2e-22
Identities = 50/113 (44%), Positives = 67/113 (59%)
Frame = +3
Query: 288 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 467
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 468 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 626
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVL 236
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 2e-22
Identities = 50/113 (44%), Positives = 67/113 (59%)
Frame = +3
Query: 288 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 467
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 468 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 626
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVL 236
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 102 bits (244), Expect = 2e-22
Identities = 50/113 (44%), Positives = 67/113 (59%)
Frame = +3
Query: 288 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 467
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 468 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 626
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVL 236
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 94.7 bits (225), Expect = 4e-20
Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Frame = +3
Query: 270 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 437
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 438 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 618 LVL 626
L+L
Sbjct: 511 LIL 513
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 93.9 bits (223), Expect = 8e-20
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Frame = +3
Query: 279 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 458
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 459 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 626
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVI 179
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 85.8 bits (203), Expect = 2e-17
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Frame = +3
Query: 282 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 461
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 462 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 626
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV 228
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 78.2 bits (184), Expect = 4e-15
Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = +3
Query: 333 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 512
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 513 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVL 626
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVM 395
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 321 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 494
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 495 SGKNLVGVAQTGSGKTLAYILPAIVHI 575
G++L+G+A+TGSGKTLA+ +PAI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 67.7 bits (158), Expect = 6e-12
Identities = 31/65 (47%), Positives = 43/65 (66%)
Frame = +3
Query: 432 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 612 IALVL 626
LVL
Sbjct: 303 TILVL 307
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 327 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 416
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.5 bits (155), Expect = 1e-11
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = +3
Query: 225 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 395
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 396 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 575
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 576 NNQPPIRRGDG-----PIALVL 626
++R G P+A++L
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVIL 243
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 64.5 bits (150), Expect = 5e-11
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Frame = +3
Query: 225 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 395
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 396 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 575
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 576 NNQPPIRRGDG-----PIALVL 626
I R G P+A++L
Sbjct: 209 MKDQHIERPRGVRGVYPLAVIL 230
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.5 bits (150), Expect = 5e-11
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +3
Query: 336 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 503
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 504 NLVGVAQTGSGKTLAYILPAIVHI 575
A TGSGKT A+I P ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.3 bits (147), Expect = 1e-10
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +3
Query: 354 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 533
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 534 GKTLAYILPAIVHINNQP 587
GKT A+ LP + + +P
Sbjct: 216 GKTAAFALPTLERLLFRP 233
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +3
Query: 312 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 485
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 486 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVL 626
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VL
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVL 192
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 573 INNQPP 590
+ P
Sbjct: 90 LKQHVP 95
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/102 (31%), Positives = 53/102 (51%)
Frame = +3
Query: 261 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 440
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 441 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 566
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +3
Query: 441 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 617
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 618 LVL 626
LV+
Sbjct: 108 LVI 110
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +3
Query: 321 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 500
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 501 KNLVGVAQTGSGKTLAYILPAI 566
K++V A+TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 59.3 bits (137), Expect = 2e-09
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 225 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 395
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 396 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 575
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 576 NNQPPIRRGDGPIAL 620
+ R G A+
Sbjct: 214 MKDQHVERPRGSRAV 228
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 59.3 bits (137), Expect = 2e-09
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 225 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 395
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 396 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 575
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 576 NNQPPIRRGDGPIAL 620
+ R G A+
Sbjct: 214 MKDQHVERPRGSRAV 228
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/66 (36%), Positives = 43/66 (65%)
Frame = +3
Query: 369 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 548
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 549 YILPAI 566
+ +P +
Sbjct: 63 FAIPIL 68
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 573 INNQP 587
+ P
Sbjct: 120 LAEDP 124
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/67 (31%), Positives = 43/67 (64%)
Frame = +3
Query: 384 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 563
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 564 IVHINNQ 584
+ ++ +
Sbjct: 130 LEKLHRE 136
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 573 INNQPPIRR 599
+ PP R
Sbjct: 142 VIKAPPASR 150
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/58 (37%), Positives = 37/58 (63%)
Frame = +3
Query: 426 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 599
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +3
Query: 324 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 503
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 504 NLVGVAQTGSGKTLAYILPAI 566
+++G A+TGSGKTLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 573 I 575
I
Sbjct: 172 I 172
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +3
Query: 357 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 536
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 537 KTLAYILPAIVHINNQP 587
KTLA++LP + + N P
Sbjct: 146 KTLAFVLPILESLVNGP 162
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 426 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 590
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 384 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 563
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 564 I 566
+
Sbjct: 171 V 171
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 573 IN 578
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 573 IN 578
I+
Sbjct: 193 ID 194
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 573 IN 578
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 573 IN 578
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 573 IN 578
I+
Sbjct: 216 ID 217
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +3
Query: 411 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 584
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +3
Query: 381 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 554
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 555 LPAIVHINNQ 584
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI 566
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +3
Query: 444 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 590
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +3
Query: 444 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 590
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 572
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 573 INNQ 584
+ +
Sbjct: 436 LREE 439
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 414 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 581
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 596
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 597 RGDGPIALVL 626
RG P+ LVL
Sbjct: 175 RGRNPLCLVL 184
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 420 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 596
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 597 RGDGPIALVL 626
RG P LVL
Sbjct: 187 RGKNPQCLVL 196
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3
Query: 354 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 533
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 534 GKT 542
GKT
Sbjct: 84 GKT 86
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 339 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS--GKNL 509
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 510 VGVAQTGSGKTLAYILPAIVHIN 578
+ A GSGKT ++L + ++
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD 157
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +3
Query: 474 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVL 626
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVL 55
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +3
Query: 405 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 584
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 459 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 566
TP+QA P+ S K++ A TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 35.5 bits (78), Expect = 0.029
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +3
Query: 270 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 431
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 432 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 566
+ G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 566
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +3
Query: 369 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 548
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 549 Y 551
+
Sbjct: 93 F 93
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 393 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 551
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 420 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 587
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 588 PIR 596
P+R
Sbjct: 91 PVR 93
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 411 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 551
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 423 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 560
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 375 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 554
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 555 LPA 563
LPA
Sbjct: 240 LPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 435 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 569
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 444 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 569
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 28.7 bits (61), Expect = 3.3
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +3
Query: 294 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE---ANFPDYVQQGVKTMGYKEP-- 458
P + K SP ++ E N V + +EV P + A P+ ++ K G E
Sbjct: 429 PGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQV 488
Query: 459 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 590
+ + AQ + + + KNL+GV + GS L+ + A+ PP
Sbjct: 489 SALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 234 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 380
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 225 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 392
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 393 FEE 401
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 225 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 392
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 393 FEE 401
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 175 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 291
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 150 ETNYRRICCLLQIWNHRFHGYY 85
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 458
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 459 TPIQAQGWPIAMS 497
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 458
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 459 TPIQAQGWPIAMS 497
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 458
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 459 TPIQAQGWPIAMS 497
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 492 MSGKNLVGVAQTGSGKTLAYILPAIV 569
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,636
Number of Sequences: 28952
Number of extensions: 252164
Number of successful extensions: 811
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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